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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHO203
Library CH
(Link to library)
Clone ID CHO203
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHO203P
(Link to Original site)
Representative DNA sequence 
>CHO203 (CHO203Q) /CSM/CH/CHO2-A/CHO203Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XAGCAGTTCAAGAGGGCTGAAGAAATTGAAAGACANCAAAATGGTAATGGTTCACCTGCT
GTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAAT
GAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATC
GATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCT
GCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAA
CAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAA
GGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTT
ATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGAT
GCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAA
AATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGAC
CAAATTAAAAATCAATTAAAAAATATTCAACATNAACAACAAATCCAAGAACAACAAGAT
AAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAAGNATTN
ATCATTCTTTCTTTTAAAAAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---QFKRAEEIERXQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGE
DIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQ
QQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAEL
AKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHXQQIQEQQDKLNQEKNQQLLEQEQNQK
XXIILSFKK
Translated Amino Acid sequence (All Frames) 
Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---sssrglkklkdxkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmv
kismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinn
nnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmln
wlkiinkrikmri*fkrnnnlltklkin*kifnxnnksknnkin*ikkkinny*nknkik
kxxsffllkn

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---avqeg*rn*ktxkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*
ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*kstt
ttrtttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c*ksst*igc*i
g*k**tresr*efssrettis*pn*ksikkystxttnprttr*iksrkkstiirtrtksk
xixhsff*k

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---QFKRAEEIERXQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGE
DIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQ
QQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAEL
AKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHXQQIQEQQDKLNQEKNQQLLEQEQNQK
XXIILSFKK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF177 (SHF177Q) /CSM/SH/SHF1-D/SHF177Q.Seq.d/                        674   0.0
SHE176 (SHE176Q) /CSM/SH/SHE1-D/SHE176Q.Seq.d/                        674   0.0
SHB806 (SHB806Q) /CSM/SH/SHB8-A/SHB806Q.Seq.d/                        674   0.0
SHB457 (SHB457Q) /CSM/SH/SHB4-C/SHB457Q.Seq.d/                        674   0.0
CHS435 (CHS435Q) /CSM/CH/CHS4-B/CHS435Q.Seq.d/                        674   0.0
CHR687 (CHR687Q) /CSM/CH/CHR6-D/CHR687Q.Seq.d/                        674   0.0
CHR233 (CHR233Q) /CSM/CH/CHR2-B/CHR233Q.Seq.d/                        674   0.0
CHO203 (CHO203Q) /CSM/CH/CHO2-A/CHO203Q.Seq.d/                        674   0.0
AHQ546 (AHQ546Q) /CSM/AH/AHQ5-B/AHQ546Q.Seq.d/                        674   0.0
AHK635 (AHK635Q) /CSM/AH/AHK6-B/AHK635Q.Seq.d/                        674   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   648   0.0    7
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   3e-30  15
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   5e-12  20
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   4e-11  20
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   7e-09  23
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   1e-08  23
BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome.    36   9e-08  33
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   1e-07  20
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        36   2e-07  26
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   2e-07  23
dna update 2005. 8.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   257   4e-67
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   2.3
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.3
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    35   2.3
CR380947_157(CR380947|pid:none) Candida glabrata strain CBS138 c...    35   3.9
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   3.9
AE016796_1436(AE016796|pid:none) Vibrio vulnificus CMCP6 chromos...    33   8.8
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   8.8
protein update 2009. 4. 9
PSORT 

 psg: 0.29  gvh: 0.21  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CHO203 is nuc
5' end seq. ID CHO203F
5' end seq. 
>CHO203F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID CHO203Z
3' end seq. 
>CHO203Z.Seq
NNNNNNNNNNAGCAGTTCAAGAGGGCTGAAGAAATTGAAAGACANCAAAATGGTAATGGT
TCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAA
ATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGT
GAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAA
CAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAAT
GAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAA
CAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAA
CTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAA
GAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAA
TTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAA
TCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATNAACAACAAATCCAAGAA
CAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAA
AAAGNATTNATCATTCTTTCTTTTAAAAAAC
Length of 3' end seq. 751
Connected seq. ID CHO203P
Connected seq. 
>CHO203P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-AGCAGTTCAAGAGGGCTGAAGAAATTGAAAGACANCAAAATGGTAATGGTTCACCTGCT
GTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAAT
GAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATC
GATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCT
GCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAA
CAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAA
GGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTT
ATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGAT
GCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAA
AATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGAC
CAAATTAAAAATCAATTAAAAAATATTCAACATNAACAACAAATCCAAGAACAACAAGAT
AAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAAGNATTN
ATCATTCTTTCTTTTAAAAAAC
Length of connected seq. 852
Full length Seq ID -
Full length Seq. -
Length of full length seq. -