>CHO809 (CHO809Q) /CSM/CH/CHO8-A/CHO809Q.Seq.d/
ATAATAATACAACAACAACAACAACATAATGTCAACACCTTTAAGAGGATCATCTCCTCA
AGTTTCATTTTATGAATCTGAACTTGATCAAGAAGGAGGCAGTGATGCCTCACACTTTAC
TTATAGAAATTATATGGAAGATGATAAAATTAATTCATTTACATTTAATATGGCAAGAAA
AGATCAAACTCAACTCTTTCAAAGAATTATTTTAACAAATGAGAGTGAAAGTGAGATTGA
AGAGTATGCAGAAGTAGCAGAACAATTATTAGATGCAATTAATCTTAGGGAAAAATATGT
TTTCCATCCAAAGATTTGGAAAGCCGATGCACCAGTCGGAGAAAAGCCACCCTATTCACC
ATTCGAATCCGATGAAAGTACCAATTGTGCCACAGAGCATATGTTTAAAGAGGTTAATGG
TGTTTATTTCGTGTATTCCAATGAAACCGATATGAAATCCAATAAAGCACTCTTTAGTGT
ACCACATACATTGGCATCCTATTATAAGGACATTAACAATTTGATGATGTTAAGTAGTTA
TGGTCCAXXXXXXXXXXTACCGATGATCCACTTCAATTCCATTACAATAAAGAACCTTTA
ATGGAGGAATACAGTATTGCAACTCAAGTTTGGAGATTATCAGTTTGCGATATTTGTGAA
ATCGCTAGAAACTCAGTACTTCAAAGTGGTTTCGAACATAATGTAAAATCTCATTGGTTA
GGTCCAGACTATGCAAACTCTGGTGGTAATGATATCAAAAAGACNAACATTAGTGATATT
CGTGTTTGCTTTANAAATGAAACCCTCATTGAGGAATTACATTTAATNTTAAAATCACTT
CAAACTTTACCAAACTTTAAAAATTTAAATATTAATTTNTTATTGGATAAATTACCATCA
GAAATTACAACTGGCAATGATTATNAATTGAAAAAAGCTCAACTAAAATTAAATGGTGGT
AATAAANTAANAAATTCTTCAGTTGGTTCAACTCCTAATAATGGTACTCCTTCTAGTTGT
GGTACTCCATCATTAAGTAGTCCTGGTGNTATTGTTCATTTAATNAAAANTAAACCTTAT
ATTCCACCACCTTTATCTTTAAATATTAAACAAGAAAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATACTAATACTATACAAANAGTAANAGTA
CTACTACTAATCAAGANNANATTCAAAATCNANAATAAAATAAATAAAANAAAAAAAAAA
AAAAA

**YNNNNNIMSTPLRGSSPQVSFYESELDQEGGSDASHFTYRNYMEDDKINSFTFNMARK
DQTQLFQRIILTNESESEIEEYAEVAEQLLDAINLREKYVFHPKIWKADAPVGEKPPYSP
FESDESTNCATEHMFKEVNGVYFVYSNETDMKSNKALFSVPHTLASYYKDINNLMMLSSY
GP---

---TDDPLQFHYNKEPLMEEYSIATQVWRLSVCDICEIARNSVLQSGFEHNVKSHWLGPD
YANSGGNDIKKTNISDIRVCFXNETLIEELHLXLKSLQTLPNFKNLNINXLLDKLPSEIT
TGNDYXLKKAQLKLNGGNKXXNSSVGSTPNNGTPSSCGTPSLSSPGXIVHLXKXKPYIPP
PLSLNIKQENNNNNNNNNNNNNNNNNNNTNTIQXVXVLLLIKXXFKIXNKINKXKKKK

Frame A:
iiiqqqqqhnvntfkriisssfil*i*t*srrrq*cltlyl*klygr**n*fiyi*ygkk
rsnstlsknyfnk*e*k*d*rvcrssrtiircn*s*gkicfpskdlesrctsrrkatlft
irir*kyqlchrayv*rg*wclfrvfq*nryeiq*stl*cttyigill*gh*qfddvk*l
ws---

---yr*stsiplq*rtfnggiqycnssleiislryl*nr*klstskwfrt*ckislvrsr
lcklww**yqkdxh**yscllxk*nph*gitfnxkitsnftkl*kfky*fxig*itirny
nwq*lxieksstkikww**xxkffswfns**wysf*lwysiik*swxycsfnxx*tlyst
tfifky*trk******************y*yytxsxstttnqxxiqnxx*nk*xkkkkk

Frame B:
**YNNNNNIMSTPLRGSSPQVSFYESELDQEGGSDASHFTYRNYMEDDKINSFTFNMARK
DQTQLFQRIILTNESESEIEEYAEVAEQLLDAINLREKYVFHPKIWKADAPVGEKPPYSP
FESDESTNCATEHMFKEVNGVYFVYSNETDMKSNKALFSVPHTLASYYKDINNLMMLSSY
GP---

---TDDPLQFHYNKEPLMEEYSIATQVWRLSVCDICEIARNSVLQSGFEHNVKSHWLGPD
YANSGGNDIKKTNISDIRVCFXNETLIEELHLXLKSLQTLPNFKNLNINXLLDKLPSEIT
TGNDYXLKKAQLKLNGGNKXXNSSVGSTPNNGTPSSCGTPSLSSPGXIVHLXKXKPYIPP
PLSLNIKQENNNNNNNNNNNNNNNNNNNTNTIQXVXVLLLIKXXFKIXNKINKXKKKK

Frame C:
nntttttt*cqhl*edhllkfhfmnlnlikkeavmphtllieiiwkmiklihlhliwqek
iklnsfkelf*qmrvkvrlksmqk*qnny*mqlilgknmfsiqrfgkpmhqsekshpihh
snpmkvpivpqsiclkrlmvfiscipmkpi*npikhslvyhihwhpiirtlti**c*vvm
v---

---pmihfnsitiknl*wrntvlqlkfgdyqfaifvksletqyfkvvsnim*nlig*vqt
mqtlvvmiskrxtlvifvfalxmkpslrnyi*x*nhfklyqtlki*ilixywinyhqklq
lamixn*kkln*n*mvvix*xilqlvqllimvlllvvvlhh*vvlvxlfi*xkxnlifhh
lyl*ilnkkiiiiiiiiiiiiiiiiiiililykx*xyyy*srxxsksxik*ikxkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO809 (CHO809Q) /CSM/CH/CHO8-A/CHO809Q.Seq.d/                       2042   0.0
SHK438 (SHK438Q) /CSM/SH/SHK4-B/SHK438Q.Seq.d/                       1033   0.0
CHR607 (CHR607Q) /CSM/CH/CHR6-A/CHR607Q.Seq.d/                       1033   0.0
CHQ809 (CHQ809Q) /CSM/CH/CHQ8-A/CHQ809Q.Seq.d/                       1033   0.0
CHP312 (CHP312Q) /CSM/CH/CHP3-A/CHP312Q.Seq.d/                       1033   0.0
CHO312 (CHO312Q) /CSM/CH/CHO3-A/CHO312Q.Seq.d/                       1033   0.0
CHO192 (CHO192Q) /CSM/CH/CHO1-D/CHO192Q.Seq.d/                       1033   0.0
CHN690 (CHN690Q) /CSM/CH/CHN6-D/CHN690Q.Seq.d/                       1033   0.0
CHJ359 (CHJ359Q) /CSM/CH/CHJ3-C/CHJ359Q.Seq.d/                       1033   0.0
CHI850 (CHI850Q) /CSM/CH/CHI8-C/CHI850Q.Seq.d/                       1033   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF238311|AF238311.1 Dictyostelium discoideum AMP deaminase (amdA) gene, complete cds.  1025   0.0    3
AP000768|AP000768.2 Homo sapiens genomic DNA, chromosome 11q13 clone:CMB9-14L24, WORKING DRAFT SEQUENCE, 9 unordered pieces.    44   1e-05  6
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36   0.002  10
BA000017|BA000017.4 Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome.    44   0.008  30
AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.    36   0.009  6
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.024  13
AC149384|AC149384.2 Phakopsora pachyrhizi clone JGIAFNA-5B10, complete sequence.    38   0.13   4
CZ545920|CZ545920.1 SRAA-aad64g11.b1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    46   0.14   2
BX294189|BX294189.11 Zebrafish DNA sequence from clone CH211-218D20 in linkage group 9.    46   0.18   10
AC127131|AC127131.4 Rattus norvegicus clone CH230-24C9, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36   0.18   11

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54DD0) RecName: Full=AMP deaminase;          EC=3.5.4.6;            323   6e-87
AL355310_6(AL355310|pid:none) Human DNA sequence from clone RP5-...   142   2e-32
A44313(A44313;S59997) AMP deaminase (EC 3.5.4.6) isoform L - hum...   142   2e-32
BC166402_1(BC166402|pid:none) Rattus norvegicus adenosine monoph...   142   2e-32
AL671854_2(AL671854|pid:none) Mouse DNA sequence from clone RP23...   142   2e-32
U16270_1(U16270|pid:none) Human AMP deaminase isoform L (AMPD2) ...   142   2e-32
(Q9UDX8) RecName: Full=AMP deaminase 2;          EC=3.5.4.6; Alt...   142   2e-32
(Q9DBT5) RecName: Full=AMP deaminase 2;          EC=3.5.4.6; Alt...   142   2e-32
AK296394_1(AK296394|pid:none) Homo sapiens cDNA FLJ55345 complet...   142   2e-32
AL355310_5(AL355310|pid:none) Human DNA sequence from clone RP5-...   134   6e-30

 psg: 0.77  gvh: 0.41  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.03
 nuc: 0.04  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for CHO809 is nuc

>CHO809F.Seq
ATAATAATACAACAACAACAACAACATAATGTCAACACCTTTAAGAGGATCATCTCCTCA
AGTTTCATTTTATGAATCTGAACTTGATCAAGAAGGAGGCAGTGATGCCTCACACTTTAC
TTATAGAAATTATATGGAAGATGATAAAATTAATTCATTTACATTTAATATGGCAAGAAA
AGATCAAACTCAACTCTTTCAAAGAATTATTTTAACAAATGAGAGTGAAAGTGAGATTGA
AGAGTATGCAGAAGTAGCAGAACAATTATTAGATGCAATTAATCTTAGGGAAAAATATGT
TTTCCATCCAAAGATTTGGAAAGCCGATGCACCAGTCGGAGAAAAGCCACCCTATTCACC
ATTCGAATCCGATGAAAGTACCAATTGTGCCACAGAGCATATGTTTAAAGAGGTTAATGG
TGTTTATTTCGTGTATTCCAATGAAACCGATATGAAATCCAATAAAGCACTCTTTAGTGT
ACCACATACATTGGCATCCTATTATAAGGACATTAACAATTTGATGATGTTAAGTAGTTA
TGGTCCANNNNNNNNNN

>CHO809Z.Seq
NNNNNNNNNNTACCGATGATCCACTTCAATTCCATTACAATAAAGAACCTTTAATGGAGG
AATACAGTATTGCAACTCAAGTTTGGAGATTATCAGTTTGCGATATTTGTGAAATCGCTA
GAAACTCAGTACTTCAAAGTGGTTTCGAACATAATGTAAAATCTCATTGGTTAGGTCCAG
ACTATGCAAACTCTGGTGGTAATGATATCAAAAAGACNAACATTAGTGATATTCGTGTTT
GCTTTANAAATGAAACCCTCATTGAGGAATTACATTTAATNTTAAAATCACTTCAAACTT
TACCAAACTTTAAAAATTTAAATATTAATTTNTTATTGGATAAATTACCATCAGAAATTA
CAACTGGCAATGATTATNAATTGAAAAAAGCTCAACTAAAATTAAATGGTGGTAATAAAN
TAANAAATTCTTCAGTTGGTTCAACTCCTAATAATGGTACTCCTTCTAGTTGTGGTACTC
CATCATTAAGTAGTCCTGGTGNTATTGTTCATTTAATNAAAANTAAACCTTATATTCCAC
CACCTTTATCTTTAAATATTAAACAAGAAAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATACTAATACTATACAAANAGTAANAGTACTACTAC
TAATCAAGANNANATTCAAAATCNANAATAAAATAAATAAAANAAAAAAAAAAAAAAA

>CHO809P.Seq
ATAATAATACAACAACAACAACAACATAATGTCAACACCTTTAAGAGGATCATCTCCTCA
AGTTTCATTTTATGAATCTGAACTTGATCAAGAAGGAGGCAGTGATGCCTCACACTTTAC
TTATAGAAATTATATGGAAGATGATAAAATTAATTCATTTACATTTAATATGGCAAGAAA
AGATCAAACTCAACTCTTTCAAAGAATTATTTTAACAAATGAGAGTGAAAGTGAGATTGA
AGAGTATGCAGAAGTAGCAGAACAATTATTAGATGCAATTAATCTTAGGGAAAAATATGT
TTTCCATCCAAAGATTTGGAAAGCCGATGCACCAGTCGGAGAAAAGCCACCCTATTCACC
ATTCGAATCCGATGAAAGTACCAATTGTGCCACAGAGCATATGTTTAAAGAGGTTAATGG
TGTTTATTTCGTGTATTCCAATGAAACCGATATGAAATCCAATAAAGCACTCTTTAGTGT
ACCACATACATTGGCATCCTATTATAAGGACATTAACAATTTGATGATGTTAAGTAGTTA
TGGTCCA----------TACCGATGATCCACTTCAATTCCATTACAATAAAGAACCTTTA
ATGGAGGAATACAGTATTGCAACTCAAGTTTGGAGATTATCAGTTTGCGATATTTGTGAA
ATCGCTAGAAACTCAGTACTTCAAAGTGGTTTCGAACATAATGTAAAATCTCATTGGTTA
GGTCCAGACTATGCAAACTCTGGTGGTAATGATATCAAAAAGACNAACATTAGTGATATT
CGTGTTTGCTTTANAAATGAAACCCTCATTGAGGAATTACATTTAATNTTAAAATCACTT
CAAACTTTACCAAACTTTAAAAATTTAAATATTAATTTNTTATTGGATAAATTACCATCA
GAAATTACAACTGGCAATGATTATNAATTGAAAAAAGCTCAACTAAAATTAAATGGTGGT
AATAAANTAANAAATTCTTCAGTTGGTTCAACTCCTAATAATGGTACTCCTTCTAGTTGT
GGTACTCCATCATTAAGTAGTCCTGGTGNTATTGTTCATTTAATNAAAANTAAACCTTAT
ATTCCACCACCTTTATCTTTAAATATTAAACAAGAAAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATACTAATACTATACAAANAGTAANAGTA
CTACTACTAATCAAGANNANATTCAAAATCNANAATAAAATAAATAAAANAAAAAAAAAA
AAAAA