>CHP761 (CHP761Q) /CSM/CH/CHP7-C/CHP761Q.Seq.d/
XXXXXXXXXXCTGAAAAGAATANTAAACTCTTTTCTGAAAGTAATATTCTCTCACCAGTT
GAATTGGAATCACGTCAAGAGATTCTCTTTGAAATTTATAATAAATCAATTAAAATGGAA
GCAAACTCTTTATATGATTTAGTTTCAACTTGTGGTACTTCCAGCTTGTTTTGCTCATCA
AAAGAATATTGCTGAATCTGTAAACTCTATAATGCCATTCATTCAAAGTCAAAAATCTTT
CAGTCAACCAAATCATCAATATTCT

---EKNXKLFSESNILSPVELESRQEILFEIYNKSIKMEANSLYDLVSTCGTSSLFCSSK
EYC*icklynaihskskifqstkssif

Frame A:
---*kex*tlf*k*yslts*igitsrdsl*nl**in*ngsklfi*fsfnlwyfqlvllik
rillnl*tl*chsfkvknlsvnqiini


Frame B:
---EKNXKLFSESNILSPVELESRQEILFEIYNKSIKMEANSLYDLVSTCGTSSLFCSSK
EYC*icklynaihskskifqstkssif


Frame C:
---krixnsflkvifshqlnwnhvkrfslkfiinqlkwkqtlymi*fqlvvlpacfahqk
niaesvnsimpfiqsqksfsqpnhqys

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP761 (CHP761Q) /CSM/CH/CHP7-C/CHP761Q.Seq.d/                        500   e-141
VSC707 (VSC707Q) /CSM/VS/VSC7-A/VSC707Q.Seq.d/                        476   e-134
VHQ481 (VHQ481Q) /CSM/VH/VHQ4-D/VHQ481Q.Seq.d/                        476   e-134
VHQ209 (VHQ209Q) /CSM/VH/VHQ2-A/VHQ209Q.Seq.d/                        476   e-134
VHQ107 (VHQ107Q) /CSM/VH/VHQ1-A/VHQ107Q.Seq.d/                        476   e-134
VHP807 (VHP807Q) /CSM/VH/VHP8-A/VHP807Q.Seq.d/                        476   e-134
VHP667 (VHP667Q) /CSM/VH/VHP6-C/VHP667Q.Seq.d/                        476   e-134
VHO229 (VHO229Q) /CSM/VH/VHO2-B/VHO229Q.Seq.d/                        476   e-134
VHN553 (VHN553Q) /CSM/VH/VHN5-C/VHN553Q.Seq.d/                        476   e-134
VHN461 (VHN461Q) /CSM/VH/VHN4-C/VHN461Q.Seq.d/                        476   e-134

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017243|AE017243.1 Mycoplasma hyopneumoniae J, complete genome.    38   8e-04  10
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    40   0.003  7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   0.013  8
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          32   0.023  13
AE017244|AE017244.1 Mycoplasma hyopneumoniae 7448, complete genome.    38   0.055  11
AC099803|AC099803.1 Homo sapiens chromosome 18 clone RP11-152J5 map 18, LOW-PASS SEQUENCE SAMPLING.    38   0.060  3
AC099366|AC099366.6 Rattus norvegicus clone CH230-95O16, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    40   0.063  3
D86212|D86212.1 Bombyx mori DNA for trehalase, complete cds.       44   0.11   2
AF130249|AF130249.1 Homo sapiens PAC 126N20 derived from chromosome 21p11.2, complete sequence, containing STCH and an unknown gene.    36   0.13   4
AC024900|AC024900.20 Homo sapiens 12 BAC RP11-549E9 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    34   0.14   6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54WR9) RecName: Full=Type-3 glutamine synthetase;          EC=...    90   3e-17
CP000885_3336(CP000885|pid:none) Clostridium phytofermentans ISD...    43   0.003
CP001114_1380(CP001114|pid:none) Deinococcus deserti VCD115, com...    42   0.008
CP000510_3297(CP000510|pid:none) Psychromonas ingrahamii 37, com...    40   0.019
CP000568_195(CP000568|pid:none) Clostridium thermocellum ATCC 27...    39   0.041
CP000951_239(CP000951|pid:none) Synechococcus sp. PCC 7002, comp...    39   0.054
AM398681_531(AM398681|pid:none) Flavobacterium psychrophilum JIP...    38   0.12
BA000022_1934(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,...    38   0.12
A53371(A53371;S76251) glutamate-ammonia ligase (EC 6.3.1.2) type...    38   0.12
AE000513_1989(AE000513|pid:none) Deinococcus radiodurans R1 chro...    38   0.12

 psg: 0.72  gvh: 0.55  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHP761 is cyt

>CHP761Z.Seq
NNNNNNNNNNCTGAAAAGAATANTAAACTCTTTTCTGAAAGTAATATTCTCTCACCAGTT
GAATTGGAATCACGTCAAGAGATTCTCTTTGAAATTTATAATAAATCAATTAAAATGGAA
GCAAACTCTTTATATGATTTAGTTTCAACTTGTGGTACTTCCAGCTTGTTTTGCTCATCA
AAAGAATATTGCTGAATCTGTAAACTCTATAATGCCATTCATTCAAAGTCAAAAATCTTT
CAGTCAACCAAATCATCAATATTCT