>CHQ142 (CHQ142Q) /CSM/CH/CHQ1-B/CHQ142Q.Seq.d/
XXXXXXXXXXTGGTTCAACCAACCAGTGGTAATTATGTACCTGTGAATGCTATTGCTTAC
ATTCAAGATCTTAATCAATCATTACAATTCACCATTGTCACTGATAGAAGTCGTGGATGT
GCATCGTTAAGAGATGGTCAATTGGATATGATGATGCATCGTCGTACTTTGAAAGATGAT
GGTCGTGGTGTTGGTCAACCAATGAATGAGTCAACTCAAATCGTTACAACTAGTAAATTG
ATTTTCCATGATATTTCAAGTTATGCTCAATCTCATTATCGTCCTGCTGCACTCTCTTTA
TCACATCCATTACTCCCAATGTTTACAACCACTCAACAATCTTCAAACGATTGGAATTCT
CAATATCAAGGTGTTTACTCACCATTGACTTCAGCNTCACCTTTACCAAATGGTTTAAAG
ATTCAAACTCTACAATGGTTAGATAATCAAGATAATACCATACTTTTACGTATTGAAAAT
ATTTATCAAATTGATGGTCAAGATTCACAAGATCCACAAACTATCACTTTAGATCTTTCA
ACTATCTTTTCAACAATTACAATCACTTCTGCAACTGAAATGAATTTAACTGGTGTTCAA
AAATTATCAAATTTATCAAGATTAAAATGGAAAACTGTTGATGGTAAC

---VQPTSGNYVPVNAIAYIQDLNQSLQFTIVTDRSRGCASLRDGQLDMMMHRRTLKDDG
RGVGQPMNESTQIVTTSKLIFHDISSYAQSHYRPAALSLSHPLLPMFTTTQQSSNDWNSQ
YQGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENIYQIDGQDSQDPQTITLDLST
IFSTITITSATEMNLTGVQKLSNLSRLKWKTVDGN

Frame A:
---gstnqw*lctcecyclhsrs*siitihhch**kswmcivkrwsigyddassyfer*w
swcwstne*vnsnryn**idfp*yfklcsislsscctlfitsitpnvynhstifkrlefs
isrclltidfsxtftkwfkdsnstmvr*sr*yhtfty*kylsn*wsrftrstnyhfrsfn
ylfnnynhfcn*nefnwcskiikfikikmenc*w*


Frame B:
---VQPTSGNYVPVNAIAYIQDLNQSLQFTIVTDRSRGCASLRDGQLDMMMHRRTLKDDG
RGVGQPMNESTQIVTTSKLIFHDISSYAQSHYRPAALSLSHPLLPMFTTTQQSSNDWNSQ
YQGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENIYQIDGQDSQDPQTITLDLST
IFSTITITSATEMNLTGVQKLSNLSRLKWKTVDGN


Frame C:
---fnqpvvimyl*mllltfkilinhynsplslievvdvhr*emvnwi**civvl*kmmv
vvlvnq*msqlkslqlvn*fsmifqvmlnliivllhslyhihysqclqplnnlqtigiln
ikvfthh*lqxhlyqmv*rfklyng*iikiipyfyvlkifiklmvkihkihklsl*ifql
sfqqlqsllqlk*i*lvfknyqiyqd*ngkllmv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ142 (CHQ142Q) /CSM/CH/CHQ1-B/CHQ142Q.Seq.d/                       1259   0.0
SHK860 (SHK860Q) /CSM/SH/SHK8-C/SHK860Q.Seq.d/                       1245   0.0
VHP767 (VHP767Q) /CSM/VH/VHP7-C/VHP767Q.Seq.d/                       1243   0.0
VHD562 (VHD562Q) /CSM/VH/VHD5-C/VHD562Q.Seq.d/                       1243   0.0
VHB838 (VHB838Q) /CSM/VH/VHB8-B/VHB838Q.Seq.d/                       1243   0.0
SHA478 (SHA478Q) /CSM/SH/SHA4-D/SHA478Q.Seq.d/                       1243   0.0
SHA454 (SHA454Q) /CSM/SH/SHA4-C/SHA454Q.Seq.d/                       1243   0.0
SHA129 (SHA129Q) /CSM/SH/SHA1-B/SHA129Q.Seq.d/                       1243   0.0
CHN816 (CHN816Q) /CSM/CH/CHN8-A/CHN816Q.Seq.d/                       1243   0.0
AHM603 (AHM603Q) /CSM/AH/AHM6-A/AHM603Q.Seq.d/                       1243   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M82822|M82822.1 Dictyostelium discoideum alpha-mannosidase (manA) gene, complete cds.  1217   0.0    1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   2e-04  15
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    32   0.003  9
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    38   0.069  9
BX890548|BX890548.9 Zebrafish DNA sequence from clone CH211-238E22 in linkage group 4  Contains seven novel genes and four CpG islands.    36   0.12   7
AL161912|AL161912.15 Human DNA sequence from clone RP11-403N16 on chromosome 9 Contains a novel pseudogene and a novel gene.    34   0.18   5
BX572092|BX572092.1 Prochlorococcus marinus MED4 complete genome; segment 3/5.    32   0.25   12
AP000962|AP000962.2 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B821P16, LL56-APP region.    40   0.47   4
AC114261|AC114261.2 Dictyostelium discoideum chromosome 2 map 126059-159710 strain AX4, complete sequence.    32   0.52   5
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    38   0.68   6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M82822_1(M82822|pid:none) Dictyostelium discoideum alpha-mannosi...   351   9e-96
(P34098) RecName: Full=Lysosomal alpha-mannosidase;          Sho...   351   9e-96
BT036325_1(BT036325|pid:none) Zea mays full-length cDNA clone ZM...    91   3e-17
AK068415_1(AK068415|pid:none) Oryza sativa Japonica Group cDNA c...    90   6e-17
(Q29451) RecName: Full=Lysosomal alpha-mannosidase;          Sho...    88   2e-16
EF146940_1(EF146940|pid:none) Populus trichocarpa clone WS01225_...    87   3e-16
AC148217_12(AC148217|pid:none) Medicago truncatula clone mth2-20...    86   7e-16
AY099704_1(AY099704|pid:none) Arabidopsis thaliana alpha-mannosi...    85   2e-15
AB005230_20(AB005230|pid:none) Arabidopsis thaliana genomic DNA,...    85   2e-15
AB026648_12(AB026648|pid:none) Arabidopsis thaliana genomic DNA,...    84   3e-15

 psg: 0.82  gvh: 0.45  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHQ142 is cyt

>CHQ142Z.Seq
NNNNNNNNNNTGGTTCAACCAACCAGTGGTAATTATGTACCTGTGAATGCTATTGCTTAC
ATTCAAGATCTTAATCAATCATTACAATTCACCATTGTCACTGATAGAAGTCGTGGATGT
GCATCGTTAAGAGATGGTCAATTGGATATGATGATGCATCGTCGTACTTTGAAAGATGAT
GGTCGTGGTGTTGGTCAACCAATGAATGAGTCAACTCAAATCGTTACAACTAGTAAATTG
ATTTTCCATGATATTTCAAGTTATGCTCAATCTCATTATCGTCCTGCTGCACTCTCTTTA
TCACATCCATTACTCCCAATGTTTACAACCACTCAACAATCTTCAAACGATTGGAATTCT
CAATATCAAGGTGTTTACTCACCATTGACTTCAGCNTCACCTTTACCAAATGGTTTAAAG
ATTCAAACTCTACAATGGTTAGATAATCAAGATAATACCATACTTTTACGTATTGAAAAT
ATTTATCAAATTGATGGTCAAGATTCACAAGATCCACAAACTATCACTTTAGATCTTTCA
ACTATCTTTTCAACAATTACAATCACTTCTGCAACTGAAATGAATTTAACTGGTGTTCAA
AAATTATCAAATTTATCAAGATTAAAATGGAAAACTGTTGATGGTAAC