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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR207
Library CH
(Link to library)
Clone ID CHR207
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16417-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHR207 (CHR207Q) /CSM/CH/CHR2-A/CHR207Q.Seq.d/
XXXXXXXXXXGGAGCAAATAGTGGTGCTGCAANTGGAGCAAATAGTGGCGCTGCAANTGG
AGCNAATAGTGGTGCTGCAACTGGTGCAAATAGTGGAANCAATGCCGCTGTAACTGGTGC
TGCAAATGGAAATAATGGCGCTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAA
TAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGCTGCAAATAGAGGAAACAA
TGCCGCTGCAACTGGTGCTGCAAATGGAAATAATGGCGCTGCAGCTGGAGCAAATAGTGG
TGCCGCAACTGCTGCAAATAGTGGTGCTGCAAATAGTGGTGCTGCAACTGCTGCAAATAG
TGGTGCTGCAGCTGGAGCAAATAGTGGTGCTGCAACTGCTGCAAATAGTGGCGCTGCAAC
TGCTGCAAGTGGTGGAAATGGTGCAAGTGGTGCTGCAAACCCTGGTTCAATAGTAACTCC
AAATGATCAAAATGTTTCTCCATTATCGAACTCTGATGCTGCAGCANCCGCAGCATCAAC
TACAGGCAGAAAC
sequence update 2002. 9.10
Translated Amino Acid sequence 
---ANSGAAXGANSGAAXGANSGAATGANSGXNAAVTGAANGNNGAAAGANSGAATAANS
GAATAANSGAATAANRGNNAAATGAANGNNGAAAGANSGAATAANSGAANSGAATAANSG
AAAGANSGAATAANSGAATAASGGNGASGAANPGSIVTPNDQNVSPLSNSDAAAXAASTT
GRN
Translated Amino Acid sequence (All Frames) 
Frame A:
---eqivvlqxeqivalqxexivvlqlvqivexmpl*lvlqmeimalqleqivvpqllqi
vvpqllqivvpqllqieetmplqlvlqmeimalqleqivvpqllqivvlqivvlqllqiv
vlqleqivvlqllqivalqllqvvemvqvvlqtlvq**lqmikmflhyrtlmlqxpqhql
qae


Frame B:
---sk*wccxwsk*wrcxwsx*wccnwck*wxqcrcnwcckwk*wrcswsk*wcrncck*
wcrncck*wcrncck*rkqcrcnwcckwk*wrcswsk*wcrncck*wcck*wccncck*w
ccswsk*wccncck*wrcncckwwkwckwcckpwfnsnsk*skcfsiiel*ccsxrsiny
rqk


Frame C:
---ANSGAAXGANSGAAXGANSGAATGANSGXNAAVTGAANGNNGAAAGANSGAATAANS
GAATAANSGAATAANRGNNAAATGAANGNNGAAAGANSGAATAANSGAANSGAATAANSG
AAAGANSGAATAANSGAATAASGGNGASGAANPGSIVTPNDQNVSPLSNSDAAAXAASTT
GRN
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD263 (SSD263Q) /CSM/SS/SSD2-C/SSD263Q.Seq.d/                       1047   0.0
SHL166 (SHL166Q) /CSM/SH/SHL1-C/SHL166Q.Seq.d/                       1047   0.0
SHL133 (SHL133Q) /CSM/SH/SHL1-B/SHL133Q.Seq.d/                       1047   0.0
SHK112 (SHK112Q) /CSM/SH/SHK1-A/SHK112Q.Seq.d/                       1047   0.0
SHB246 (SHB246Q) /CSM/SH/SHB2-B/SHB246Q.Seq.d/                       1047   0.0
SHA440 (SHA440Q) /CSM/SH/SHA4-B/SHA440Q.Seq.d/                       1047   0.0
SHA229 (SHA229Q) /CSM/SH/SHA2-B/SHA229Q.Seq.d/                       1047   0.0
CHR207 (CHR207Q) /CSM/CH/CHR2-A/CHR207Q.Seq.d/                       1047   0.0
CHI407 (CHI407Q) /CSM/CH/CHI4-A/CHI407Q.Seq.d/                       1047   0.0
SHG352 (SHG352Q) /CSM/SH/SHG3-C/SHG352Q.Seq.d/                       1043   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CK783714|CK783714.1 UI-D-GC1-aau-c-07-0-UI.s1 UI-D-GC1 Alexandrium tamarense cDNA clone UI-D-GC1-aau-c-07-0-UI 3', mRNA sequence.    30   0.003  3
DT338982|DT338982.1 JBW092C02.b_012.abi Pineapple week 5-10 nematode-infected gall cDNA library Ananas comosus cDNA clone JBW092C02 similar to undiscovered sequence, mRNA sequence.    30   0.003  3
AC141063|AC141063.1 Homo sapiens chromosome 16 clone RP11-1256C5, WORKING DRAFT SEQUENCE, 11 unordered pieces.    30   0.007  3
AC141261|AC141261.1 Homo sapiens chromosome 16 clone RP11-1335J10, WORKING DRAFT SEQUENCE, 4 unordered pieces.    28   0.023  3
AC167065|AC167065.1 Xenopus tropicalis clone ISB1-217D23, WORKING DRAFT SEQUENCE, 2 unordered pieces.    28   0.027  3
DQ013872|DQ013872.1 Ophiostoma novo-ulmi isolate V1 mating type 3' flanking region genomic sequence.    34   0.15   2
CJ765123|CJ765123.1 Ipomoea nil cDNA clone:jmsf35i02, 3' end.      48   0.19   1
BJ576741|BJ576741.1 Ipomoea nil cDNA clone:jm40p11, 3' end, single read.    48   0.19   1
AE003498|AE003498.5 Drosophila melanogaster chromosome X, section 50 of 74 of the complete sequence.    36   0.40   2
AC018488|AC018488.7 Drosophila melanogaster, chromosome X, region 13A-13B, BAC clone BACR09F03, complete sequence.    36   0.41   2
dna update 2005.11.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB...    52   8e-06
protein update 2009. 1. 4
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.00  mip: 0.13
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for CHR207 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHR207Z
3' end seq. 
>CHR207Z.Seq
NNNNNNNNNNGGAGCAAATAGTGGTGCTGCAANTGGAGCAAATAGTGGCGCTGCAANTGG
AGCNAATAGTGGTGCTGCAACTGGTGCAAATAGTGGAANCAATGCCGCTGTAACTGGTGC
TGCAAATGGAAATAATGGCGCTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAA
TAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGCTGCAAATAGAGGAAACAA
TGCCGCTGCAACTGGTGCTGCAAATGGAAATAATGGCGCTGCAGCTGGAGCAAATAGTGG
TGCCGCAACTGCTGCAAATAGTGGTGCTGCAAATAGTGGTGCTGCAACTGCTGCAAATAG
TGGTGCTGCAGCTGGAGCAAATAGTGGTGCTGCAACTGCTGCAAATAGTGGCGCTGCAAC
TGCTGCAAGTGGTGGAAATGGTGCAAGTGGTGCTGCAAACCCTGGTTCAATAGTAACTCC
AAATGATCAAAATGTTTCTCCATTATCGAACTCTGATGCTGCAGCANCCGCAGCATCAAC
TACAGGCAGAAAC
Length of 3' end seq. 553
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -