AFA747 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AFA747
Library	AF (Link to library)
Clone ID	AFA747 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16243-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA7-B/AFA747Q.Seq.d/
Representative seq. ID	AFA747E (Link to Original site)
Representative DNA sequence	>AFA747 (AFA747Q) /CSM/AF/AFA7-B/AFA747Q.Seq.d/ ATTTTTCATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAA GAATTGAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTT CTGGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTT GTAAAGCTGAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTA TTAAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGG GAGCAGTATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAG CAGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTAC AAGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAG GCGGTGTAGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTG CCCAAGAGGATCCAATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATG TCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACA AGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCG TAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAA CCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCG CTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTA CCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTG TCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAG CTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAG CATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTG GTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAA GAGAATTACATCGTCGTAAAGGTAAATATGGTGTAATCTNCTATGT
sequence update	2002.10. 8
Translated Amino Acid sequence	FSYLYIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAIC KAERGAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLA GLPKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVA QEDPIISGCYNTMGQTSENVAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTV KTEDGKTIVVDKDEGIREKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRST AERLGLKVELVFVAFAAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQA FYSCKVLGLDMNKVNPNGSGIALGHPLGATGARQMATISRELHRRKGKYGVIXY
Translated Amino Acid sequence (All Frames)	Frame A: ifhiyiyytplikchsiqelklflvtaldqfnqiqlldqlnqemilllhhfvqqf vklkeehskrqhqmiyhqllnilsklpniqnlemllweqyyqdhhkvqpklelphy* qvyqrkyhviqstdnvhqvykqlpivqqqskqvsmtlvqavnqviqwhgmvvstrl pkriqslvvvttlwvkplkmsqsvlvspektkmnslihtrrqvppkkqvnltmksfqsp rprmakpsssiktkvsvrkpplqiwpnnqlskrvvqpplvtlvkvmvpplvlkev ppkdwvsrlnwfsllllsvsnhplwvlvqplqfqppnklvsplkistflksmkllllk hftvvrfwvwitkliqmalvslvihvllvpvkwlpfqenyivvkvnmvsxm Frame B: ffifiynitphn*nviqfknnyfsslkhwtnfriksnfwisirrycncctisysnl skrsiqrdstrfistsytyyqsyqirskinwrccygssitkiitrcnrsschiis rftkgstmlysqqtmfirftsncqlcsssqsrflhwfsrrcrinefksngmgwwfqrgc prgsnhwllqhygsnlkcrrafwchqkrprilckftqegrcrpksrirnrsshr kdrgwqnhrrrrrrypenhrcrfgqiktsfqrgwynhrwlsnewcrrlfsyekky rrkigsqgigfrsfcccrcrtihygywssrcnssrlktswshhryrrfnqsfcfss ilqlgfgfgyeqsskwlwyrfrssircywcpsngyhfkritssr*iwcnllc Frame C: FSYLYIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAIC KAERGAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLA GLPKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVA QEDPIISGCYNTMGQTSENVAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTV KTEDGKTIVVDKDEGIREKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRST AERLGLKVELVFVAFAAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQA FYSCKVLGLDMNKVNPNGSGIALGHPLGATGARQMATISRELHRRKGKYGVIXY
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AFA747 (AFA747Q) /CSM/AF/AFA7-B/AFA747Q.Seq.d/ 2464 0.0 AFG267 (AFG267Q) /CSM/AF/AFG2-C/AFG267Q.Seq.d/ 2440 0.0 CFF662 (CFF662Q) /CSM/CF/CFF6-C/CFF662Q.Seq.d/ 2430 0.0 CFC445 (CFC445Q) /CSM/CF/CFC4-B/CFC445Q.Seq.d/ 2426 0.0 SFD792 (SFD792Q) /CSM/SF/SFD7-D/SFD792Q.Seq.d/ 2424 0.0 CFC529 (CFC529Q) /CSM/CF/CFC5-B/CFC529Q.Seq.d/ 2422 0.0 VFM636 (VFM636Q) /CSM/VF/VFM6-B/VFM636Q.Seq.d/ 2415 0.0 AFE219 (AFE219Q) /CSM/AF/AFE2-A/AFE219Q.Seq.d/ 2415 0.0 VFD865 (VFD865Q) /CSM/VF/VFD8-C/VFD865Q.Seq.d/ 2413 0.0 SFA524 (SFA524Q) /CSM/SF/SFA5-A/SFA524Q.Seq.d/ 2411 0.0
own update	2002.10.28
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 2196 0.0 2 CB005315\|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence. 60 1e-13 5 AU089542\|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09. 44 6e-13 5 CB008288\|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence. 60 7e-12 4 BM065622\|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence. 68 5e-10 3 CD007738\|CD007738.1 VVB078G11_334604 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB078G11 5, mRNA sequence. 60 1e-08 2 CA515447\|CA515447.1 KS09042A06 KS09 Capsicum annuum cDNA, mRNA sequence. 68 1e-08 2 CD716621\|CD716621.1 VVB129E11_405541 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB129E11 5, mRNA sequence. 60 1e-08 2 CD008871\|CD008871.1 VVB097G11_339261 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB097G11 5, mRNA sequence. 60 1e-08 2 CD719494\|CD719494.1 VVB161G09_410895 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB161G09 5, mRNA sequence. 60 1e-08 2
dna update	2003. 7.25
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC116986_75(AC116986\|pid:none) Dictyostelium discoideum chromoso... 753 0.0 X75329_1(X75329\|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket... 411 e-113 AM474896_9(AM474896\|pid:none) Vitis vinifera contig VV79X001698.... 410 e-113 S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu... 409 e-113 AB333797_1(AB333797\|pid:none) Glycine max mRNA for peroxisomal 3... 405 e-111 T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur... 404 e-111 (Q56WD9) RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal; ... 404 e-111 EU964831_1(EU964831\|pid:none) Zea mays clone 281881 3-ketoacyl-C... 402 e-110 BT070433_1(BT070433\|pid:none) Picea sitchensis clone WS02729_F15... 402 e-110 BT034496_1(BT034496\|pid:none) Zea mays full-length cDNA clone ZM... 402 e-110
protein update	2009. 3.27
PSORT	psg: 0.91 gvh: 0.40 alm: 0.28 top: 0.33 tms: 0.07 mit: 0.33 mip: 0.05 nuc: 0.02 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 28.0 %: nuclear 20.0 %: cytoplasmic 16.0 %: endoplasmic reticulum 16.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: Golgi 4.0 %: peroxisomal 4.0 %: plasma membrane 4.0 %: vesicles of secretory system >> prediction for AFA747 is nuc
5' end seq. ID	AFA747F
5' end seq.	>AFA747F.Seq ATTTTTCATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAA GAATTGAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTT CTGGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTT GTAAAGCTGAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTA TTAAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGG GAGCAGTATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAG CAGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTAC AAGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAG GCGGTGTAGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTG CCCAAGAGGATCCAATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATG TCGCAGAGCGTTTTGGTGTCACCAGAA----------
Length of 5' end seq.	627
3' end seq. ID	AFA747Z
3' end seq.	>AFA747Z.Seq ----------GAAAATGTCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATT CTCTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGA AATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGA AGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGA GGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTT AGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGC TTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCC AGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGA AGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGT TAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCA AATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGTGTAATCTNCTA TGT
Length of 3' end seq.	653
Connected seq. ID	AFA747P
Connected seq.	>AFA747P.Seq ATTTTTCATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAA GAATTGAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTT CTGGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTT GTAAAGCTGAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTA TTAAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGG GAGCAGTATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAG CAGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTAC AAGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAG GCGGTGTAGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTG CCCAAGAGGATCCAATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATG TCGCAGAGCGTTTTGGTGTCACCAGAA----------GAAAATGTCGCAGAGCGTTTTGG TGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGCCGC CCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGG CAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTT GGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCA AATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGG TCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTAT GGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAA AGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAA GGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCA TCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTCG TAAAGGTAAATATGGTGTAATCTNCTATGT
Length of connected seq.	1280
Full length Seq ID	AFA747E
Full length Seq.	>AFA747E.Seq ATTTTTCATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAA GAATTGAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTT CTGGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTT GTAAAGCTGAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTA TTAAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGG GAGCAGTATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAG CAGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTAC AAGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAG GCGGTGTAGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTG CCCAAGAGGATCCAATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATG TCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACA AGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCG TAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAA CCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCG CTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTA CCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTG TCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAG CTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAG CATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTG GTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAA GAGAATTACATCGTCGTAAAGGTAAATATGGTGTAATCTNCTATGT
Length of full length seq.	1246

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas