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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BP10
Library FC
(Link to library)
Clone ID FC-BP10
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15050-1
Original site URL
Representative seq. ID FC-BP10E
(Link to Original site)
Representative DNA sequence 
>FC-BP10 (FC-BP10Q) /CSM/FC/FC-BP/FC-BP10Q.Seq.d/
ATTGAGAAAGAAGAGAATAAAGATAGTTCACCACCAACTACACCACCAACAGGAGGACCC
ACAAAAAATAATGATATTGATGATGATGAAAAAGAAAATAAAATTGAAAGATCATTAACA
GAGAATTTAAATAAAAGATTTTACAACAACAACAACAACAATAGTAATAATTCTAATGGT
GAAGAAATTGAAGATATTGATTATAAAAATTTTAAAACTATTAAAGAATTTGGATATTAT
TATAATGATAAAGGTGAATTAAGAAGTATTGAAGGTGAAGAGAAATTTAAATTTATAAAT
CAACAACAGTATGATAGGTTAGGTGATATTATTGTGAAAACCATTCAAAATAAAATGAAA
TCGGAACCAATCAATTTAGAGGAGCATTGGATACCAAAAGGTGAAACCAACCAATGTAAC
ATTTTCACAAGTAAAGATTTCTTTGAAAACCCAACAAAGCTTATGGTATTCATTAATGGT
AGTGGTGCAGTTAAATCTGGTCAATGGGCAAGAAGTCTATGTATAAATGACACACTAAAC
ACTGGTTCGATTTTACCTTATTTGAATGACGCAATTTCAAATGATTTCTCAATCATAGTT
TTAAATCCAAATTATAATGTATTTGAAGAAAGAATAATTGACGAAGGAGAAGAACAAAAA
GAAAAAGCAAAAGAAGAGGAAGAAAAAAAAGATGATAATGGTAAACTATTAAAAAAGAAA
AGAGTAGATAATTCAATCAAAGGTAGTGAAAATTCAAATAATCATATTTTAACAGTTTAT
GATGAATTTATAAGAAATCCCCCGCCAAAGGGATTGTAATTGTTGCCCATAGTTTTGGTG
GTGTGAATACTCCATATCTATTGGATAATAGAGGTGAAGAGATTGCTGATAGATTAAAAT
CCATTGCATTCCCTGATTCCGTTCATTCATTTTCCCCAAAATCATCATCTTTCCCTAAGT
CATTCTTTGCTGATGAAAATTAAACAAAGAATTGGGTAAAAAGTGATAAAAAGTTAAATA
CAGATTTAGGATTTTCAAAATTACAAGGTTGCAATATAGCCTCATCTGGTCACAGAGTTT
ACGAATTCAACTTCCTCCGCTTGTAGGGTCCCTTTATTTCAATTTATTTTAAATTCATTA
AAAAAATAAAAAAATACTGATCCTTACTATTAAATCAAAAAAAAAAAAAAAAAAAAACAA
AACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 5.13
Translated Amino Acid sequence 
IEKEENKDSSPPTTPPTGGPTKNNDIDDDEKENKIERSLTENLNKRFYNNNNNNSNNSNG
EEIEDIDYKNFKTIKEFGYYYNDKGELRSIEGEEKFKFINQQQYDRLGDIIVKTIQNKMK
SEPINLEEHWIPKGETNQCNIFTSKDFFENPTKLMVFINGSGAVKSGQWARSLCINDTLN
TGSILPYLNDAISNDFSIIVLNPNYNVFEERIIDEGEEQKEKAKEEEEKKDDNGKLLKKK
RVDNSIKGSENSNNHILTVYDEFIRNPPPKGL*llpivlvv*ilhiywiievkrllid*n
plhslipfihfpqnhhlslshsllmkikqrig*kviks*iqi*dfqnykvai*phlvtef
tnstssacrvplfqfilnslkk*kntdpyy*ikkkkkkkqnkkkkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
IEKEENKDSSPPTTPPTGGPTKNNDIDDDEKENKIERSLTENLNKRFYNNNNNNSNNSNG
EEIEDIDYKNFKTIKEFGYYYNDKGELRSIEGEEKFKFINQQQYDRLGDIIVKTIQNKMK
SEPINLEEHWIPKGETNQCNIFTSKDFFENPTKLMVFINGSGAVKSGQWARSLCINDTLN
TGSILPYLNDAISNDFSIIVLNPNYNVFEERIIDEGEEQKEKAKEEEEKKDDNGKLLKKK
RVDNSIKGSENSNNHILTVYDEFIRNPPPKGL*llpivlvv*ilhiywiievkrllid*n
plhslipfihfpqnhhlslshsllmkikqrig*kviks*iqi*dfqnykvai*phlvtef
tnstssacrvplfqfilnslkk*kntdpyy*ikkkkkkkqnkkkkkkkkkkkkkkkkkkk


Frame B:
lrkkrikivhhqlhhqqedpqkimilmmmkkkiklkdh*qri*ikdfttttttiviilmv
kklkiliikilkllknldiiimikvn*evlkvkrnlnl*innsmig*vill*kpfkik*n
rnqsi*rsigyqkvkptnvtfsqvkislktqqslwyslmvvvqlnlvngqevyv*mth*t
lvrfyli*mtqfqmisqs*f*iqiimylkke*ltkeknkkkkqkkrkkkkmimvny*krk
e*iiqskvvkiqiiif*qfmmnl*eiprqrdcnccp*fwwceysisig**r*rdc**iki
hcip*frsfifpkiiifp*vilc**klnkelgkk**kvkyrfrifkitrlqysliwsqsl
riqlpplvgslyfnlf*ih*knkkililtikskkkkkknktkkkkkkkkkkkkkkkkkk


Frame C:
*erre*r*fttnyttnrrthkk**y****krk*n*kiinrefk*kilqqqqqq***f*w*
rn*ry*l*kf*ny*riwill***r*ikky*r*rei*iyksttv**vr*yycenhsk*nei
gtnqfrgaldtkr*nqpm*hfhk*rfl*kpnkaygih*w*wcs*iwsmgkksmyk*htkh
wfdftlfe*rnfk*flnhsfkskl*ci*rknn*rrrrtkrkskrrgrkkr**w*tikkek
sr*fnqr**kfk*syfnsl**iykkspakgivivahsfggvntpylldnrgeeiadrlks
iafpdsvhsfspksssfpksffaden*tknwvksdkklntdlgfsklqgcniassghrvy
efnflrl*gpfisiyfkfikkikky*slllnqkkkkkktkqkkkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BP10 (FC-BP10Q) /CSM/FC/FC-BP/FC-BP10Q.Seq.d/                      954   0.0
CFC788 (CFC788Q) /CSM/CF/CFC7-D/CFC788Q.Seq.d/                        611   e-173
SFI367 (SFI367Q) /CSM/SF/SFI3-C/SFI367Q.Seq.d/                        607   e-172
CHB646 (CHB646Q) /CSM/CH/CHB6-B/CHB646Q.Seq.d/                        579   e-164
SLJ845 (SLJ845Q) /CSM/SL/SLJ8-B/SLJ845Q.Seq.d/                        242   1e-62
SSM449 (SSM449Q) /CSM/SS/SSM4-C/SSM449Q.Seq.d/                         50   8e-05
SSJ617 (SSJ617Q) /CSM/SS/SSJ6-A/SSJ617Q.Seq.d/                         50   8e-05
VFI206 (VFI206Q) /CSM/VF/VFI2-A/VFI206Q.Seq.d/                         44   0.005
SSK505 (SSK505Q) /CSM/SS/SSK5-A/SSK505Q.Seq.d/                         44   0.005
FC-AY02 (FC-AY02Q) /CSM/FC/FC-AY/FC-AY02Q.Seq.d/                       44   0.005
own update 2002.10. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   952   0.0    28
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    50   5e-15  31
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   8e-13  22
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    36   5e-12  26
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             36   8e-12  29
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    34   1e-11  22
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   5e-11  22
AE015941|AE015941.1 Clostridium tetani E88, section 6 of 10 of the complete genome.    34   7e-11  19
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   2e-10  28
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    44   7e-10  21
dna update 2003.12.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ168549_8(FJ168549|pid:none) Bodo saltans clone fosmid 16K02, c...   113   2e-23
(Q6DIP8) RecName: Full=UPF0528 protein FAM172A; Flags: Precursor;     110   1e-22
AK296986_1(AK296986|pid:none) Homo sapiens cDNA FLJ52596 complet...   108   4e-22
BC057380_1(BC057380|pid:none) Mus musculus RIKEN cDNA 1110033M05...   107   7e-22
AM392882_1(AM392882|pid:none) Synthetic construct Homo sapiens c...   107   9e-22
BC054635_1(BC054635|pid:none) Danio rerio family with sequence s...   107   1e-21
AF064782_1(AF064782|pid:none) Mus musculus clone pEN87 unknown m...   106   2e-21
(Q5ZK44) RecName: Full=UPF0528 protein FAM172A; Flags: Precursor...   103   2e-20
AB171955_1(AB171955|pid:none) Macaca fascicularis brain cDNA clo...    92   3e-17
DQ440279_1(DQ440279|pid:none) Aedes aegypti clone AET-357 conser...    86   3e-15
protein update 2009. 7. 3
PSORT 

 psg: 0.75  gvh: 0.16  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for FC-BP10 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-BP10E
Full length Seq. 
>FC-BP10E.Seq
ATTGAGAAAGAAGAGAATAAAGATAGTTCACCACCAACTACACCACCAACAGGAGGACCC
ACAAAAAATAATGATATTGATGATGATGAAAAAGAAAATAAAATTGAAAGATCATTAACA
GAGAATTTAAATAAAAGATTTTACAACAACAACAACAACAATAGTAATAATTCTAATGGT
GAAGAAATTGAAGATATTGATTATAAAAATTTTAAAACTATTAAAGAATTTGGATATTAT
TATAATGATAAAGGTGAATTAAGAAGTATTGAAGGTGAAGAGAAATTTAAATTTATAAAT
CAACAACAGTATGATAGGTTAGGTGATATTATTGTGAAAACCATTCAAAATAAAATGAAA
TCGGAACCAATCAATTTAGAGGAGCATTGGATACCAAAAGGTGAAACCAACCAATGTAAC
ATTTTCACAAGTAAAGATTTCTTTGAAAACCCAACAAAGCTTATGGTATTCATTAATGGT
AGTGGTGCAGTTAAATCTGGTCAATGGGCAAGAAGTCTATGTATAAATGACACACTAAAC
ACTGGTTCGATTTTACCTTATTTGAATGACGCAATTTCAAATGATTTCTCAATCATAGTT
TTAAATCCAAATTATAATGTATTTGAAGAAAGAATAATTGACGAAGGAGAAGAACAAAAA
GAAAAAGCAAAAGAAGAGGAAGAAAAAAAAGATGATAATGGTAAACTATTAAAAAAGAAA
AGAGTAGATAATTCAATCAAAGGTAGTGAAAATTCAAATAATCATATTTTAACAGTTTAT
GATGAATTTATAAGAAATCCCCCGCCAAAGGGATTGTAATTGTTGCCCATAGTTTTGGTG
GTGTGAATACTCCATATCTATTGGATAATAGAGGTGAAGAGATTGCTGATAGATTAAAAT
CCATTGCATTCCCTGATTCCGTTCATTCATTTTCCCCAAAATCATCATCTTTCCCTAAGT
CATTCTTTGCTGATGAAAATTAAACAAAGAATTGGGTAAAAAGTGATAAAAAGTTAAATA
CAGATTTAGGATTTTCAAAATTACAAGGTTGCAATATAGCCTCATCTGGTCACAGAGTTT
ACGAATTCAACTTCCTCCGCTTGTAGGGTCCCTTTATTTCAATTTATTTTAAATTCATTA
AAAAAATAAAAAAATACTGATCCTTACTATTAAATCAAAAAAAAAAAAAAAAAAAAACAA
AACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 1260