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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FCL-AA17
Library FCL
(Link to library)
Clone ID FCL-AA17
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15602-1
Original site URL
Representative seq. ID FCL-AA17P
(Link to Original site)
Representative DNA sequence 
>FCL-AA17 (FCL-AA17Q) /CSM/FCL/FCL-AA/FCL-AA17Q.Seq.d/
ATTATTATTTATTTATTTATTTATTAAAAAAAAAAAAAAAACAAACAAATAAAAAAAAAA
AAAAAAAATGTCTTTAAGTCAACAATCAATTTCAATTATTAAAGCAACAGTACCTGTTTT
ACAAGTCCATGGAGTTAATATCACTACAACCTTCTATAGAAATATGTTTAAAGCTAATCC
ACAACTTTTAAATATTTTCAATCATTCAAATCAAAGAGAAGGAAAACAACAAAATGCTTT
AGCAAATACAGTTTTACAAGCTGCCATTCATATTGATAAATTGAATGAATTAAATTTAGC
TCCAATCGTTCATAAACATGTTGCATTGGGTGTATTACCAGAACATTATCCAATTGTTGG
TACAAATTTATTGGGTGCAATTAAAGAAGTTCTTCAAGATGCTGCCACTGATGAGATTTT
AGGTGCATGGGGTGAAGCTTATGGTGTAATTGCTCAAGCTTTCATTGATGCTGAAGCCGC
TTTATATAAAGTTACAGAGGAGCAAATTGGAGGTTGGAGAGATACTCGTGAATTCATTGT
CGATAGAXXXXXXXXXXTCGACACACCATCCGAACAATACTATCGTATTTAGTGTAAAGA
AAGAAGACGCCCTCAAAAAGTCTGATCCAAATGGTGTAGTTTCAAATCATTTGCATGCAA
ATGTTAAGGTTGGCGATAAAGTTTTACTCTCCCCTCCAGCTGGTGACTATGTAGTCGACC
AATTATCAAGCAATCCAATCCTTTTGGTTAGTGGTGGTGTTGGTATCACTCCATTATTAA
GTATGGCAAAGGCAACTTTAGCTAAACAACCAGAAAGAGAAGTCACCTTTGTTCACTCTT
CAAAGAACAAACAATATCAACCATTTGCAAATGAATTATCCCAATTGGAAAAATCAAATA
AAGTAAAGGTATCAACTGTTCATTCTGAAACTGATGGTCAAATCACCAAAGATAAATTAG
AAAAATTCATCAATCCTTCTCAAATTAAAGATACTAAAGTTTTCATCTGTGGTCCAGTAT
CTTTTATGTCTGCAATTAATAAACAATTAATTGAATTAGGTTATCCAAAAGAAAATATTT
CTTATGAAATTTTTGGTCCATTAACAAATGTATAAAAAAAAATAAAAAATAAAAAATAAA
AAAAATAACATATTTAAAATAAATAAA
sequence update 1996.12.25
Translated Amino Acid sequence 
llfiylfikkkkktnk*KKKKKMSLSQQSISIIKATVPVLQVHGVNITTTFYRNMFKANP
QLLNIFNHSNQREGKQQNALANTVLQAAIHIDKLNELNLAPIVHKHVALGVLPEHYPIVG
TNLLGAIKEVLQDAATDEILGAWGEAYGVIAQAFIDAEAALYKVTEEQIGGWRDTREFIV
DR---

---STHHPNNTIVFSVKKEDALKKSDPNGVVSNHLHANVKVGDKVLLSPPAGDYVVDQLS
SNPILLVSGGVGITPLLSMAKATLAKQPEREVTFVHSSKNKQYQPFANELSQLEKSNKVK
VSTVHSETDGQITKDKLEKFINPSQIKDTKVFICGPVSFMSAINKQLIELGYPKENISYE
IFGPLTNV*kkiknkk*kk*hi*nk*
Translated Amino Acid sequence (All Frames) 
Frame A:
iiiylfiy*kkkknkqikkkkknvfkstinfny*snstcftspws*yhynll*kyv*s*s
ttfkyfqsfkskrrkttkcfskysftschsy**ie*ikfssnrs*tccigcitrtlsncw
ykfigcn*rsssrcch**dfrcmg*slwcncssfh*c*srfi*syrganwrlerys*ihc
r*---

---STHHPNNTIVFSVKKEDALKKSDPNGVVSNHLHANVKVGDKVLLSPPAGDYVVDQLS
SNPILLVSGGVGITPLLSMAKATLAKQPEREVTFVHSSKNKQYQPFANELSQLEKSNKVK
VSTVHSETDGQITKDKLEKFINPSQIKDTKVFICGPVSFMSAINKQLIELGYPKENISYE
IFGPLTNV*kkiknkk*kk*hi*nk*

Frame B:
llfiylfikkkkktnk*KKKKKMSLSQQSISIIKATVPVLQVHGVNITTTFYRNMFKANP
QLLNIFNHSNQREGKQQNALANTVLQAAIHIDKLNELNLAPIVHKHVALGVLPEHYPIVG
TNLLGAIKEVLQDAATDEILGAWGEAYGVIAQAFIDAEAALYKVTEEQIGGWRDTREFIV
DR---

---rhtirtilsylv*rkktpsksliqmv*fqiicmqmlrlaikfysplqlvtm*stnyq
aiqsfwlvvvlvslhy*vwqrql*lnnqkeksplftlqrtnninhlqmnypnwknqik*r
yqlfilklmvkspkin*knssillklkilkfssvvqyllclqlinn*ln*viqkkiflmk
flvh*qmykkk*kiknkknnifkink

Frame C:
yylfiyllkkkkkqtnkkkkkkcl*vnnqfqllkqqylfyksmelislqpsieiclklih
nf*ifsiiqikekennkml*qiqfyklpfilin*mn*i*lqsfinmlhwvyyqniiqllv
qiywvqlkkffkmlplmrf*vhgvklmv*llklslmlkplyiklqrsklevgeilvnsls
i---

---dtpseqyyri*ckerrrpqkv*skwcsfksfackc*gwr*sftlpssw*lcsrpiik
qsnpfg*wwcwyhsiikygkgnfs*ttrkrshlcslfkeqtistick*iipigkik*skg
incsf*n*wsnhqr*irkihqsfsn*ry*sfhlwssifyvcn**tin*irlskrkyfl*n
fwsinkcikknkk*kikkitylk*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FCL-AA17 (FCL-AA17Q) /CSM/FCL/FCL-AA/FCL-AA17Q.Seq.d/                2012   0.0
VSH228 (VSH228Q) /CSM/VS/VSH2-B/VSH228Q.Seq.d/                       1082   0.0
VSA370 (VSA370Q) /CSM/VS/VSA3-C/VSA370Q.Seq.d/                       1082   0.0
VFF225 (VFF225Q) /CSM/VF/VFF2-B/VFF225Q.Seq.d/                       1082   0.0
SLA171 (SLA171Q) /CSM/SL/SLA1-C/SLA171Q.Seq.d/                       1082   0.0
VSA808 (VSA808Q) /CSM/VS/VSA8-A/VSA808Q.Seq.d/                       1080   0.0
SLC715 (SLC715Q) /CSM/SL/SLC7-A/SLC715Q.Seq.d/                       1070   0.0
VSD490 (VSD490Q) /CSM/VS/VSD4-D/VSD490Q.Seq.d/                       1051   0.0
VSI227 (VSI227Q) /CSM/VS/VSI2-B/VSI227Q.Seq.d/                       1049   0.0
VFN493 (VFN493Q) /CSM/VF/VFN4-D/VFN493Q.Seq.d/                       1003   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB025583|AB025583.1 Dictyostelium discoideum DdFHa mRNA for flavohemoglobin, complete cds.  1041  0.0  5
AB025584|AB025584.1 Dictyostelium discoideum DdFHb mRNA for flavohemoglobin, complete cds.    80  2e-44  7
AX458560|AX458560.1 Sequence 106 from Patent WO0246454.           48  4e-05  3
BX546449|BX546449.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-40I7.    48  7e-04  3
AC026903|AC026903.3 Homo sapiens chromosome 5 clone RP11-212K11 map 5, WORKING DRAFT SEQUENCE, 19 unordered pieces.    50  7e-04  3
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    50  8e-04  4
AC011678|AC011678.4 Homo sapiens clone RP11-14B7, WORKING DRAFT SEQUENCE, 15 unordered pieces.    50  0.001  5
AL935334|AL935334.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-199B20.    42  0.001  10
AC105452|AC105452.3 Homo sapiens BAC clone RP11-122J10 from 4, complete sequence.    42  0.001  7
AC092319|AC092319.2 Homo sapiens chromosome 5 clone RP11-103L11, complete sequence.    50  0.001  2
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB025584_1(AB025584|pid:none) Dictyostelium discoideum DdFHb mRN...   231   3e-59
CP000937_1813(CP000937|pid:none) Francisella philomiragia subsp....   125   2e-53
CP000943_5325(CP000943|pid:none) Methylobacterium sp. 4-46, comp...   139   1e-52
CP000817_4223(CP000817|pid:none) Lysinibacillus sphaericus C3-41...   196   2e-48
(Q81T23) RecName: Full=Flavohemoprotein; AltName: Full=Hemoglobi...   172   1e-41
CP000903_1350(CP000903|pid:none) Bacillus weihenstephanensis KBA...   172   1e-41
CP000485_1227(CP000485|pid:none) Bacillus thuringiensis str. Al ...   172   1e-41
(Q6HLA6) RecName: Full=Flavohemoprotein; AltName: Full=Hemoglobi...   172   1e-41
(Q73B49) RecName: Full=Flavohemoprotein; AltName: Full=Hemoglobi...   172   2e-41
(Q81FW4) RecName: Full=Flavohemoprotein; AltName: Full=Hemoglobi...   171   3e-41
protein update 2009. 4.14
PSORT 

 psg: 0.78  gvh: 0.45  alm: 0.32  top: 0.73  tms: 0.07  mit: 0.42  mip: 0.10
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.08  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for FCL-AA17 is nuc
5' end seq. ID FCL-AA17F
5' end seq. 
>FCL-AA17F.Seq
ATTATTATTTATTTATTTATTTATTAAAAAAAAAAAAAAAACAAACAAATAAAAAAAAAA
AAAAAAAATGTCTTTAAGTCAACAATCAATTTCAATTATTAAAGCAACAGTACCTGTTTT
ACAAGTCCATGGAGTTAATATCACTACAACCTTCTATAGAAATATGTTTAAAGCTAATCC
ACAACTTTTAAATATTTTCAATCATTCAAATCAAAGAGAAGGAAAACAACAAAATGCTTT
AGCAAATACAGTTTTACAAGCTGCCATTCATATTGATAAATTGAATGAATTAAATTTAGC
TCCAATCGTTCATAAACATGTTGCATTGGGTGTATTACCAGAACATTATCCAATTGTTGG
TACAAATTTATTGGGTGCAATTAAAGAAGTTCTTCAAGATGCTGCCACTGATGAGATTTT
AGGTGCATGGGGTGAAGCTTATGGTGTAATTGCTCAAGCTTTCATTGATGCTGAAGCCGC
TTTATATAAAGTTACAGAGGAGCAAATTGGAGGTTGGAGAGATACTCGTGAATTCATTGT
CGATAGA----------
Length of 5' end seq. 547
3' end seq. ID FCL-AA17Z
3' end seq. 
>FCL-AA17Z.Seq
----------TCGACACACCATCCGAACAATACTATCGTATTTAGTGTAAAGAAAGAAGA
CGCCCTCAAAAAGTCTGATCCAAATGGTGTAGTTTCAAATCATTTGCATGCAAATGTTAA
GGTTGGCGATAAAGTTTTACTCTCCCCTCCAGCTGGTGACTATGTAGTCGACCAATTATC
AAGCAATCCAATCCTTTTGGTTAGTGGTGGTGTTGGTATCACTCCATTATTAAGTATGGC
AAAGGCAACTTTAGCTAAACAACCAGAAAGAGAAGTCACCTTTGTTCACTCTTCAAAGAA
CAAACAATATCAACCATTTGCAAATGAATTATCCCAATTGGAAAAATCAAATAAAGTAAA
GGTATCAACTGTTCATTCTGAAACTGATGGTCAAATCACCAAAGATAAATTAGAAAAATT
CATCAATCCTTCTCAAATTAAAGATACTAAAGTTTTCATCTGTGGTCCAGTATCTTTTAT
GTCTGCAATTAATAAACAATTAATTGAATTAGGTTATCCAAAAGAAAATATTTCTTATGA
AATTTTTGGTCCATTAACAAATGTATAAAAAAAAATAAAAAATAAAAAATAAAAAAAATA
ACATATTTAAAATAAATAAA
Length of 3' end seq. 610
Connected seq. ID FCL-AA17P
Connected seq. 
>FCL-AA17P.Seq
ATTATTATTTATTTATTTATTTATTAAAAAAAAAAAAAAAACAAACAAATAAAAAAAAAA
AAAAAAAATGTCTTTAAGTCAACAATCAATTTCAATTATTAAAGCAACAGTACCTGTTTT
ACAAGTCCATGGAGTTAATATCACTACAACCTTCTATAGAAATATGTTTAAAGCTAATCC
ACAACTTTTAAATATTTTCAATCATTCAAATCAAAGAGAAGGAAAACAACAAAATGCTTT
AGCAAATACAGTTTTACAAGCTGCCATTCATATTGATAAATTGAATGAATTAAATTTAGC
TCCAATCGTTCATAAACATGTTGCATTGGGTGTATTACCAGAACATTATCCAATTGTTGG
TACAAATTTATTGGGTGCAATTAAAGAAGTTCTTCAAGATGCTGCCACTGATGAGATTTT
AGGTGCATGGGGTGAAGCTTATGGTGTAATTGCTCAAGCTTTCATTGATGCTGAAGCCGC
TTTATATAAAGTTACAGAGGAGCAAATTGGAGGTTGGAGAGATACTCGTGAATTCATTGT
CGATAGA----------TCGACACACCATCCGAACAATACTATCGTATTTAGTGTAAAGA
AAGAAGACGCCCTCAAAAAGTCTGATCCAAATGGTGTAGTTTCAAATCATTTGCATGCAA
ATGTTAAGGTTGGCGATAAAGTTTTACTCTCCCCTCCAGCTGGTGACTATGTAGTCGACC
AATTATCAAGCAATCCAATCCTTTTGGTTAGTGGTGGTGTTGGTATCACTCCATTATTAA
GTATGGCAAAGGCAACTTTAGCTAAACAACCAGAAAGAGAAGTCACCTTTGTTCACTCTT
CAAAGAACAAACAATATCAACCATTTGCAAATGAATTATCCCAATTGGAAAAATCAAATA
AAGTAAAGGTATCAACTGTTCATTCTGAAACTGATGGTCAAATCACCAAAGATAAATTAG
AAAAATTCATCAATCCTTCTCAAATTAAAGATACTAAAGTTTTCATCTGTGGTCCAGTAT
CTTTTATGTCTGCAATTAATAAACAATTAATTGAATTAGGTTATCCAAAAGAAAATATTT
CTTATGAAATTTTTGGTCCATTAACAAATGTATAAAAAAAAATAAAAAATAAAAAATAAA
AAAAATAACATATTTAAAATAAATAAA
Length of connected seq. 1157
Full length Seq ID -
Full length Seq. -
Length of full length seq. -