>AFH788 (AFH788Q) /CSM/AF/AFH7-D/AFH788Q.Seq.d/
XXXXXXXXXXTTTACTACCATTCCACCAACTCCAACACCAACACAATTACAACACCAAAA
ACAACAACAACAACAGCAAGAGGCAGATCAAAAAGATCAAAAAGAACTACCAATATTAAA
TGGAGCTTCAGTTTCATCTTCAAATTCGTCACCTTTAAATAGAGGTCCTTCATTTTCTAC
AAGTGTTGAAGATTCTCCATCCCAATTTGATAATATTTCAAATTATCCATTATCAAAGAA
AATCATTGATAATATTGAACAGGCTGTAAATGTAATTGTACCATCATCACCAAGTAATCC
TTTAAATAGGTCAAATTCTACTGGGTTTTGGAGATCACCTTCAAATTTCTTTTCAAATTT
ATTAGGTAG

---TTIPPTPTPTQLQHQKQQQQQQEADQKDQKELPILNGASVSSSNSSPLNRGPSFSTS
VEDSPSQFDNISNYPLSKKIIDNIEQAVNVIVPSSPSNPLNRSNSTGFWRSPSNFFSNLL
G

Frame A:
---llpfhqlqhqhnyntknnnnnskrqikkikknyqy*melqfhlqirhl*ievlhflq
vlkilhpnliifqiihyqrksliilnrl*m*lyhhhqvil*igqillgfgdhlqisfqiy
*v


Frame B:
---yyhstnsntntittpktttttargrskrskrttnikwsfsfifkfvtfk*rsfifyk
c*rfsipi**yfklsiikenh**y*tgckcnctiitk*sfk*vkfywvleitfkflfkfi
r*


Frame C:
---TTIPPTPTPTQLQHQKQQQQQQEADQKDQKELPILNGASVSSSNSSPLNRGPSFSTS
VEDSPSQFDNISNYPLSKKIIDNIEQAVNVIVPSSPSNPLNRSNSTGFWRSPSNFFSNLL
G

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFH788 (AFH788Q) /CSM/AF/AFH7-D/AFH788Q.Seq.d/                        583   e-166
SSL185 (SSL185Q) /CSM/SS/SSL1-D/SSL185Q.Seq.d/                        575   e-163
CFJ227 (CFJ227Q) /CSM/CF/CFJ2-B/CFJ227Q.Seq.d/                        575   e-163
CFA822 (CFA822Q) /CSM/CF/CFA8-A/CFA822Q.Seq.d/                        575   e-163
AFK757 (AFK757Q) /CSM/AF/AFK7-C/AFK757Q.Seq.d/                        575   e-163
AFJ792 (AFJ792Q) /CSM/AF/AFJ7-D/AFJ792Q.Seq.d/                        567   e-161
AFJ646 (AFJ646Q) /CSM/AF/AFJ6-B/AFJ646Q.Seq.d/                        567   e-161
AFH691 (AFH691Q) /CSM/AF/AFH6-D/AFH691Q.Seq.d/                        547   e-155
CFJ396 (CFJ396Q) /CSM/CF/CFJ3-D/CFJ396Q.Seq.d/                        537   e-152
SSH502 (SSH502Q) /CSM/SS/SSH5-A/SSH502Q.Seq.d/                        519   e-147

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB001684|AB001684.1 Chlorella vulgaris C-27 chloroplast DNA, complete sequence.    42   0.010  4
AL139076|AL139076.2 Campylobacter jejuni NCTC11168 complete genome; segment 3/6.    34   0.022  9
BH952687|BH952687.1 odi68d11.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    34   0.022  3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    30   0.046  11
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   0.052  9
AC023466|AC023466.2 Homo sapiens chromosome 7 clone RP11-661A23 map 7, LOW-PASS SEQUENCE SAMPLING.    34   0.10   4
BI646658|BI646658.1 603276570F1 NCI_CGAP_Mam3 Mus musculus cDNA clone IMAGE:5317001 5', mRNA sequence.    36   0.15   2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    32   0.24   9
AC095048|AC095048.3 Homo sapiens BAC clone RP11-239A9 from 4, complete sequence.    36   0.30   3
Z98857|Z98857.36 Caenorhabditis elegans DNA *** SEQUENCING IN PROGRESS *** from clone.    32   0.31   8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001100_769(CP001100|pid:none) Chloroherpeton thalassium ATCC 3...    33   2.9

 psg: 0.83  gvh: 0.55  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for AFH788 is nuc

>AFH788Z.Seq
----------TTTACTACCATTCCACCAACTCCAACACCAACACAATTACAACACCAAAA
ACAACAACAACAACAGCAAGAGGCAGATCAAAAAGATCAAAAAGAACTACCAATATTAAA
TGGAGCTTCAGTTTCATCTTCAAATTCGTCACCTTTAAATAGAGGTCCTTCATTTTCTAC
AAGTGTTGAAGATTCTCCATCCCAATTTGATAATATTTCAAATTATCCATTATCAAAGAA
AATCATTGATAATATTGAACAGGCTGTAAATGTAATTGTACCATCATCACCAAGTAATCC
TTTAAATAGGTCAAATTCTACTGGGTTTTGGAGATCACCTTCAAATTTCTTTTCAAATTT
ATTAGGTAG