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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFD789
Library SF
(Link to library)
Clone ID SFD789
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09745-1
Original site URL
Representative seq. ID SFD789Z
(Link to Original site)
Representative DNA sequence 
>SFD789 (SFD789Q) /CSM/SF/SFD7-D/SFD789Q.Seq.d/
XXXXXXXXXXATTTCATCACCATTANCAACTCAATTTACCACAAGCAGTGGGTAGCTCAT
ACGCTCAAAAATTAGCAGGTGAAAAGAATTGTACCATCGTTTACTTTGGTGAGGGTGCTG
CAAGTGAGGGTGATTTCCATGCTGCTATGAATTTCGCCGCAGCATTGTCAACACCAACTA
TCTTTTTCTGTCGTAACAATAAATGGGCAATCTCTACACCCTCAAAAGAGCAATACAAAG
GTGATGGTATTGCTGGTCGTGGTCCAAATGGCTACGGTATGAAAACTATCAGAGTCGATG
GTAACGATATTTGGGCCGTATACAATGTGACTAAATTAGCACGTAAAATCGCCGTCGAAG
AACAAGTTCCAGTTCTCATCGAAGCTATGACCTATCGTGTTGGTCATCATTCTACCTCTG
ATGACTCTTCTCGTTATCGTACTGTTGAAGAGATCAACGCTTGGAAAGAAGGTAAAAATC
CAATTAGTCGTTTAAGAAACTACATGAATCACAAAGGTTGGTGGAGTGATGCTCAAGAGA
AGGAAACTATCGCAAACGCTCGTACTACCGTTCGTGAATCCTTAGTCAACGCTGAAAAAC
AATATAAACCATCAATCAATGAAATCTTTACCGATGTTTATGATAAACCAACTCCAAATC
TCATCGAACAACAAAAAGAATTAATTGAACATTGAAATTATATCCAGATGAATATCCATT
AAATCAATTTGCNATTCAAAATNA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---FHHHXQLNLPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNFAAALSTPTI
FFCRNNKWAISTPSKEQYKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTKLARKIAVEE
QVPVLIEAMTYRVGHHSTSDDSSRYRTVEEINAWKEGKNPISRLRNYMNHKGWWSDAQEK
ETIANARTTVRESLVNAEKQYKPSINEIFTDVYDKPTPNLIEQQKELIEH*nyiqmnih*
inlxfkx
Translated Amino Acid sequence (All Frames) 
Frame A:
---FHHHXQLNLPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNFAAALSTPTI
FFCRNNKWAISTPSKEQYKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTKLARKIAVEE
QVPVLIEAMTYRVGHHSTSDDSSRYRTVEEINAWKEGKNPISRLRNYMNHKGWWSDAQEK
ETIANARTTVRESLVNAEKQYKPSINEIFTDVYDKPTPNLIEQQKELIEH*nyiqmnih*
inlxfkx


Frame B:
---fitixnsiyhkqwvahtlkn*qvkrivpsftlvrvlqvrvismll*ispqhcqhqls
fsvvtingqslhpqksntkvmvllvvvqmatv*klsesmvtifgpytm*ln*hvkspskn
kfqfsskl*pivlviilplmtllvivllkrstlgkkvkiqlvv*ett*itkvggvmlkrr
klsqtlvlpfvnp*stlknninhqsmkslpmfminqlqissnnkkn*lnieiisr*isik
sicxskx


Frame C:
---ssplxtqfttssg*lirskisr*kelyhrllw*gcck*g*fpccyefrrsivntnyl
fls*q*mgnlytlkraiqr*wycwswskwlryenyqsrw*rylgriqcd*ist*nrrrrt
sssshrsydlscwssfyl**lfslsyc*rdqrlerr*ksn*sfkklhesqrlve*csreg
nyrkrsyyrs*ilsqr*kti*tinq*nlyrcl**tnskshrttkrin*tlklypdeypln
qfaiqn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFD789 (SFD789Q) /CSM/SF/SFD7-D/SFD789Q.Seq.d/                       1439   0.0
VFF167 (VFF167Q) /CSM/VF/VFF1-C/VFF167Q.Seq.d/                       1350   0.0
VFC651 (VFC651Q) /CSM/VF/VFC6-C/VFC651Q.Seq.d/                       1066   0.0
VFL814 (VFL814Q) /CSM/VF/VFL8-A/VFL814Q.Seq.d/                        975   0.0
VSC882 (VSC882Q) /CSM/VS/VSC8-D/VSC882Q.Seq.d/                        916   0.0
VSC865 (VSC865Q) /CSM/VS/VSC8-C/VSC865Q.Seq.d/                        620   e-177
SLK867 (SLK867Q) /CSM/SL/SLK8-C/SLK867Q.Seq.d/                        391   e-107
SLG304 (SLG304Q) /CSM/SL/SLG3-A/SLG304Q.Seq.d/                        281   7e-75
VFN549 (VFN549Q) /CSM/VF/VFN5-C/VFN549Q.Seq.d/                         40   0.047
VFK224 (VFK224Q) /CSM/VF/VFK2-A/VFK224Q.Seq.d/                         40   0.047
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG046427|BG046427.1 saa63f08.y1 Gm-c1060 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1060-1431 5' similar to TR:Q9ZT57 Q9ZT57 BRANCHED-CHAIN ALPHA KETO-ACID DEHYDROGENASE E1 ALPHA SUBUNIT ;, mRNA sequence.    48   0.007  2
CD432516|CD432516.1 ETH1_30_F11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_30_F11_A002 5', mRNA sequence.    50   0.044  1
AY089131|AY089131.1 Arabidopsis thaliana clone 3693 mRNA, complete sequence.    48   0.17   1
BQ080101|BQ080101.1 san05f09.y1 Gm-c1084 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1084-2970 5' similar to TR:Q9ZT57 Q9ZT57 BRANCHED-CHAIN ALPHA KETO-ACID DEHYDROGENASE E1 ALPHA SUBUNIT ;, mRNA sequence.    48   0.17   1
BI308407|BI308407.1 EST529817 GPOD Medicago truncatula cDNA clone pGPOD-5B24 5' end, mRNA sequence.    48   0.17   1
AW759353|AW759353.1 sl41b12.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-3864 5' similar to TR:Q9ZT57 Q9ZT57 BRANCHED-CHAIN ALPHA KETO-ACID DEHYDROGENASE E1 ALPHA SUBUNIT ;, mRNA sequence.    48   0.17   1
AW201355|AW201355.1 sf02b05.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-1066 5' similar to TR:Q9ZT57 Q9ZT57 BRANCHED-CHAIN ALPHA KETO-ACID DEHYDROGENASE E1 ALPHA SUBUNIT ;, mRNA sequence.    48   0.17   1
CA953426|CA953426.1 sav56f02.y1 Gm-c1069 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1069-7179 5' similar to TR:Q9ZT57 Q9ZT57 BRANCHED-CHAIN ALPHA KETO-ACID DEHYDROGENASE E1 ALPHA SUBUNIT ;, mRNA sequence.    48   0.17   1
AW780578|AW780578.1 sl72g01.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-6889 5' similar to TR:O03849 O03849 BRANCHED CHAIN ALPHA-KETO ACID DEHYDROGENASE E1-ALPHA SUBUNIT PRECURSOR ;, mRNA sequence.    48   0.17   1
BM520096|BM520096.1 sak88h04.y1 Gm-c1057 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1057-3032 5' similar to TR:Q9ZT57 Q9ZT57 BRANCHED-CHAIN ALPHA KETO-ACID DEHYDROGENASE E1 ALPHA SUBUNIT ;, mRNA sequence.    48   0.17   1
dna update 2003.12.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54M22) RecName: Full=2-oxoisovalerate dehydrogenase subunit al...   451   e-129
BC127357_1(BC127357|pid:none) Xenopus tropicalis hypothetical pr...   265   1e-69
(P50136) RecName: Full=2-oxoisovalerate dehydrogenase subunit al...   262   9e-69
EU442569_1(EU442569|pid:none) Sus scrofa branched chain keto aci...   262   9e-69
(P11178) RecName: Full=2-oxoisovalerate dehydrogenase subunit al...   261   2e-68
BC109669_1(BC109669|pid:none) Bos taurus branched chain keto aci...   261   2e-68
S62652_1(S62652|pid:none) branched-chain alpha-keto acid dehydro...   261   2e-68
(P12694) RecName: Full=2-oxoisovalerate dehydrogenase subunit al...   261   2e-68
AK313300_1(AK313300|pid:none) Homo sapiens cDNA, FLJ93812, highl...   261   2e-68
J04474_1(J04474|pid:none) Human branched chain alpha-keto acid d...   261   2e-68
protein update 2009. 5.23
PSORT 

 psg: 0.81  gvh: 0.54  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SFD789 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFD789Z
3' end seq. 
>SFD789Z.Seq
----------ATTTCATCACCATTANCAACTCAATTTACCACAAGCAGTGGGTAGCTCAT
ACGCTCAAAAATTAGCAGGTGAAAAGAATTGTACCATCGTTTACTTTGGTGAGGGTGCTG
CAAGTGAGGGTGATTTCCATGCTGCTATGAATTTCGCCGCAGCATTGTCAACACCAACTA
TCTTTTTCTGTCGTAACAATAAATGGGCAATCTCTACACCCTCAAAAGAGCAATACAAAG
GTGATGGTATTGCTGGTCGTGGTCCAAATGGCTACGGTATGAAAACTATCAGAGTCGATG
GTAACGATATTTGGGCCGTATACAATGTGACTAAATTAGCACGTAAAATCGCCGTCGAAG
AACAAGTTCCAGTTCTCATCGAAGCTATGACCTATCGTGTTGGTCATCATTCTACCTCTG
ATGACTCTTCTCGTTATCGTACTGTTGAAGAGATCAACGCTTGGAAAGAAGGTAAAAATC
CAATTAGTCGTTTAAGAAACTACATGAATCACAAAGGTTGGTGGAGTGATGCTCAAGAGA
AGGAAACTATCGCAAACGCTCGTACTACCGTTCGTGAATCCTTAGTCAACGCTGAAAAAC
AATATAAACCATCAATCAATGAAATCTTTACCGATGTTTATGATAAACCAACTCCAAATC
TCATCGAACAACAAAAAGAATTAATTGAACATTGAAATTATATCCAGATGAATATCCATT
AAATCAATTTGCNATTCAAAATNA
Length of 3' end seq. 734
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -