>SFE273 (SFE273Q) /CSM/SF/SFE2-D/SFE273Q.Seq.d/
XXXXXXXXXXGTGGATCCTCATGCTGGTAACGTTTTAGTTAGACAACATCCNNAACCACC
CAAATCANCCACAAATAGTATTATTGGATCATGGCCTATATAGAGAGTACGATGAAGAAT
TTAGATTGAATTTCTGTAACCTCTACAAGAATTTAGTATTGTGTAACAATAAAAAAGTTG
AAAAATATAGTAAAGCATTGGGTGTACAAAATTGGAAACTTTTCTCAACAATGATTCTAA
TGCGTAATTTCGAAGGTTCTTCAGTTGGTTTATCAAATTCAATATCATCAGAAGAATTGG
AGAAACTATTATCAGGTGCAATTGAAAGACTTAAAGATATCAATCTCTTAATGAAAGCAA
TGCCAAGACATTTACTATTAATCTTAAGAAATAATAACCTTTTAAGATCAATCAATATGG
AACTTGGTAGTCCAGTTAATAGATTTTCAATTATGGCTCGTTATGCTGCCAAAGGTTTAA
ATAGTAATTCTTCAAAAAATAGTGGTATCATTAGATTAGTAAAAAGTGTTGAAGAGAAAG
TATCATTAGAAGTAATGTTAAAAGGTTATGAATTATACTATTATTTTGTTAATAGAATTT
TATCAATTTTAATAAGATTACATATAATGTAATNCCTGNAAA

---wilmlvtf*LDNIXNHPNXPQIVLLDHGLYREYDEEFRLNFCNLYKNLVLCNNKKVE
KYSKALGVQNWKLFSTMILMRNFEGSSVGLSNSISSEELEKLLSGAIERLKDINLLMKAM
PRHLLLILRNNNLLRSINMELGSPVNRFSIMARYAAKGLNSNSSKNSGIIRLVKSVEEKV
SLEVMLKGYELYYYFVNRILSILIRLHIM*xlx

Frame A:
---wilmlvtf*LDNIXNHPNXPQIVLLDHGLYREYDEEFRLNFCNLYKNLVLCNNKKVE
KYSKALGVQNWKLFSTMILMRNFEGSSVGLSNSISSEELEKLLSGAIERLKDINLLMKAM
PRHLLLILRNNNLLRSINMELGSPVNRFSIMARYAAKGLNSNSSKNSGIIRLVKSVEEKV
SLEVMLKGYELYYYFVNRILSILIRLHIM*xlx


Frame B:
---gsscw*rfs*ttsxttqixhk*yywimayiestmknld*isvtstri*ycvtikklk
nivkhwvykignfsqq*f*cviskvlqlvyqiqyhqknwrnyyqvqlkdlkisis**kqc
qdiyy*s*eiitf*dqsiwnlvvqlidfqlwlvmlpkv*ivilqkivvsld**kvlkrky
h*k*c*kvmnytiilliefyqf**dyi*cnxxk


Frame C:
---dphagnvlvrqhpxppksxtnsiigswpi*rvr*ri*iefl*plqefsiv*q*ks*k
i**sigctkletflnndsna*frrffswfikfniirrigetiircn*kt*ryqslnesna
ktftinlkk**pfkinqygtw*ss**ifnygslccqrfk**ffkk*wyh*iskkc*resi
irsnvkrl*iillfc**nfinfnkitynvxpx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFE273 (SFE273Q) /CSM/SF/SFE2-D/SFE273Q.Seq.d/                       1223   0.0
SFE320 (SFE320Q) /CSM/SF/SFE3-A/SFE320Q.Seq.d/                       1164   0.0
VHO124 (VHO124Q) /CSM/VH/VHO1-A/VHO124Q.Seq.d/                        755   0.0
VHH552 (VHH552Q) /CSM/VH/VHH5-C/VHH552Q.Seq.d/                        714   0.0
VHD382 (VHD382Q) /CSM/VH/VHD3-D/VHD382Q.Seq.d/                        268   1e-70
VHA283 (VHA283Q) /CSM/VH/VHA2-D/VHA283Q.Seq.d/                        264   1e-69
VHE266 (VHE266Q) /CSM/VH/VHE2-C/VHE266Q.Seq.d/                        246   4e-64
VHM351 (VHM351Q) /CSM/VH/VHM3-C/VHM351Q.Seq.d/                         40   0.041
SSH543 (SSH543Q) /CSM/SS/SSH5-B/SSH543Q.Seq.d/                         36   0.63
SSE661 (SSE661Q) /CSM/SS/SSE6-C/SSE661Q.Seq.d/                         36   0.63

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ294725|AJ294725.1 Astasia longa complete chloroplast genome.     38   0.003  6
AC093849|AC093849.2 Homo sapiens BAC clone RP11-489G11 from 4, complete sequence.    34   0.023  2
AC009415|AC009415.2 Homo sapiens BAC clone RP11-576H9 from 7p11.2-p21, complete sequence.    42   0.040  6
AC107405|AC107405.5 Rattus norvegicus clone CH230-194N14, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38   0.049  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    30   0.050  15
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             34   0.059  20
AC084301|AC084301.12 Homo sapiens 3 BAC RP11-203F4 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    34   0.087  9
AP003194|AP003194.2 Clostridium perfringens str. 13 DNA, complete genome, section 10/10.    44   0.12   11
AC112461|AC112461.5 Rattus norvegicus clone CH230-161H14, WORKING DRAFT SEQUENCE, 1 ordered piece.    48   0.15   1
AC016902|AC016902.4 Homo sapiens BAC clone RP11-217B19 from 11, complete sequence.    48   0.15   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF044016_1(EF044016|pid:none) Synthetic construct clone ATCC 106...    70   1e-12
(Q80V03) RecName: Full=Uncharacterized aarF domain-containing pr...    70   1e-12
AK039217_1(AK039217|pid:none) Mus musculus adult male hypothalam...    70   1e-12
BC101659_1(BC101659|pid:none) Homo sapiens aarF domain containin...    65   4e-11
BC085013_1(BC085013|pid:none) Homo sapiens aarF domain containin...    65   4e-11
BC064345_1(BC064345|pid:none) Homo sapiens aarF domain containin...    65   4e-11
BC168693_1(BC168693|pid:none) Rattus norvegicus aarF domain cont...    64   5e-11
(Q6INL7) RecName: Full=Uncharacterized aarF domain-containing pr...    57   9e-10
(Q5M7P6) RecName: Full=Uncharacterized aarF domain-containing pr...    56   2e-09
(Q9D0L4) RecName: Full=Uncharacterized aarF domain-containing pr...    55   1e-08

 psg: 0.75  gvh: 0.40  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SFE273 is cyt

>SFE273Z.Seq
----------GTGGATCCTCATGCTGGTAACGTTTTAGTTAGACAACATCCNNAACCACC
CAAATCANCCACAAATAGTATTATTGGATCATGGCCTATATAGAGAGTACGATGAAGAAT
TTAGATTGAATTTCTGTAACCTCTACAAGAATTTAGTATTGTGTAACAATAAAAAAGTTG
AAAAATATAGTAAAGCATTGGGTGTACAAAATTGGAAACTTTTCTCAACAATGATTCTAA
TGCGTAATTTCGAAGGTTCTTCAGTTGGTTTATCAAATTCAATATCATCAGAAGAATTGG
AGAAACTATTATCAGGTGCAATTGAAAGACTTAAAGATATCAATCTCTTAATGAAAGCAA
TGCCAAGACATTTACTATTAATCTTAAGAAATAATAACCTTTTAAGATCAATCAATATGG
AACTTGGTAGTCCAGTTAATAGATTTTCAATTATGGCTCGTTATGCTGCCAAAGGTTTAA
ATAGTAATTCTTCAAAAAATAGTGGTATCATTAGATTAGTAAAAAGTGTTGAAGAGAAAG
TATCATTAGAAGTAATGTTAAAAGGTTATGAATTATACTATTATTTTGTTAATAGAATTT
TATCAATTTTAATAAGATTACATATAATGTAATNCCTGNAAA