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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFE469
Library SF
(Link to library)
Clone ID SFE469
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13179-1|Contig-U16443-1
Original site URL
Representative seq. ID SFE469P
(Link to Original site)
Representative DNA sequence 
>SFE469 (SFE469Q) /CSM/SF/SFE4-C/SFE469Q.Seq.d/
TACATCCATAGTAAAATATTTTATAACAACAATAATAATAATACTATTTAGNGAAAATAA
TAACTACTATATCAATAATAATAAACTATCACTTAACTAAAGTAAAATAAAATAAATATT
TAGAAATGATTGCACTATTATTATTACAAATAATATTCTTTGTNGGGTATTATGTTATGA
GNATNACATTNGGACTTTTTAAAATATTNTTAACATTATTXXXXXXXXXXAAANCAANGC
AANGGAAAGNCGNTGNGAACANAAAANGCAANCTTANAAACCCTTTGCAAAACCNGNTTT
AANAAGNCNTGGAAAAAANTNTGCNANCNTTGNTTAAAAANATTACCCNAAAACNGGGTT
CNTACCNGCNTTAATAAAACNAGCNGNTGAATT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
hp**nil*qq***yylxkiittisiiinyhltkvk*NKYLEMIALLLLQIIFFVGYYVMX
XTXGLFKIXLTL---

---XQXXGKXXXTXXAXLXTLCKTXFXKXWKKXCXXXLKXLPXNXVXTXXNKTSX*i
Translated Amino Acid sequence (All Frames) 
Frame A:
yihskifynnnnnnti*xk**llyq***tit*lk*nkini*k*lhyyyyk*yslxgiml*
xxhxdflkyx*hy---

---kxxqxkxxxnxkxxlxnplqnxx*xxxekxxxxlxkxitxkxgsyxx**nxxxn

Frame B:
tsivkyfittiiiilfxennnyyinnnklsln*skik*ifrndctiiitnnilcxvlcye
xxixtf*nixnii---

---XQXXGKXXXTXXAXLXTLCKTXFXKXWKKXCXXXLKXLPXNXVXTXXNKTSX*i

Frame C:
hp**nil*qq***yylxkiittisiiinyhltkvk*NKYLEMIALLLLQIIFFVGYYVMX
XTXGLFKIXLTL---

---xxaxexrxexkxqxxkpfakpxlxxxgkxxaxxx*kxypktgfxpalikxaxe
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFH390 (VFH390Q) /CSM/VF/VFH3-D/VFH390Q.Seq.d/                        240   1e-62
SFI780 (SFI780Q) /CSM/SF/SFI7-D/SFI780Q.Seq.d/                        240   1e-62
SFH190 (SFH190Q) /CSM/SF/SFH1-D/SFH190Q.Seq.d/                        240   1e-62
SFF118 (SFF118Q) /CSM/SF/SFF1-A/SFF118Q.Seq.d/                        240   1e-62
SFE469 (SFE469Q) /CSM/SF/SFE4-C/SFE469Q.Seq.d/                        240   1e-62
CFI602 (CFI602Q) /CSM/CF/CFI6-A/CFI602Q.Seq.d/                        240   1e-62
CFI354 (CFI354Q) /CSM/CF/CFI3-C/CFI354Q.Seq.d/                        240   1e-62
CFH248 (CFH248Q) /CSM/CF/CFH2-B/CFH248Q.Seq.d/                        240   1e-62
AFN270 (AFN270Q) /CSM/AF/AFN2-C/AFN270Q.Seq.d/                        240   1e-62
AFD403 (AFD403Q) /CSM/AF/AFD4-A/AFD403Q.Seq.d/                        240   1e-62
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36   6e-07  12
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            38   4e-06  10
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   6e-06  9
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           38   1e-05  11
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    36   6e-05  10
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           34   1e-04  10
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  36   1e-04  11
AL162891|AL162891.4 Human chromosome 14 DNA sequence BAC R-353P15 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    50   3e-04  4
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P3.    38   4e-04  9
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    34   0.001  9
dna update 2003.12.24
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 195,708,721
protein update 2009. 5.23
PSORT 

 psg: 0.94  gvh: 0.57  alm: 0.24  top: 0.60  tms: 0.07  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.12  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SFE469 is cyt
5' end seq. ID SFE469F
5' end seq. 
>SFE469F.Seq
TACATCCATAGTAAAATATTTTATAACAACAATAATAATAATACTATTTAGNGAAAATAA
TAACTACTATATCAATAATAATAAACTATCACTTAACTAAAGTAAAATAAAATAAATATT
TAGAAATGATTGCACTATTATTATTACAAATAATATTCTTTGTNGGGTATTATGTTATGA
GNATNACATTNGGACTTTTTAAAATATTNTTAACATTATT----------
Length of 5' end seq. 220
3' end seq. ID SFE469Z
3' end seq. 
>SFE469Z.Seq
----------AAANCAANGCAANGGAAAGNCGNTGNGAACANAAAANGCAANCTTANAAA
CCCTTTGCAAAACCNGNTTTAANAAGNCNTGGAAAAAANTNTGCNANCNTTGNTTAAAAA
NATTACCCNAAAACNGGGTTCNTACCNGCNTTAATAAAACNAGCNGNTGAATT
Length of 3' end seq. 163
Connected seq. ID SFE469P
Connected seq. 
>SFE469P.Seq
TACATCCATAGTAAAATATTTTATAACAACAATAATAATAATACTATTTAGNGAAAATAA
TAACTACTATATCAATAATAATAAACTATCACTTAACTAAAGTAAAATAAAATAAATATT
TAGAAATGATTGCACTATTATTATTACAAATAATATTCTTTGTNGGGTATTATGTTATGA
GNATNACATTNGGACTTTTTAAAATATTNTTAACATTATT----------AAANCAANGC
AANGGAAAGNCGNTGNGAACANAAAANGCAANCTTANAAACCCTTTGCAAAACCNGNTTT
AANAAGNCNTGGAAAAAANTNTGCNANCNTTGNTTAAAAANATTACCCNAAAACNGGGTT
CNTACCNGCNTTAATAAAACNAGCNGNTGAATT
Length of connected seq. 383
Full length Seq ID -
Full length Seq. -
Length of full length seq. -