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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFG884
Library SF
(Link to library)
Clone ID SFG884
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16453-1
Original site URL
Representative seq. ID SFG884F
(Link to Original site)
Representative DNA sequence 
>SFG884 (SFG884Q) /CSM/SF/SFG8-D/SFG884Q.Seq.d/
ATTTTCAAGACCGACTTCTTCAGACAAAAGTAAATAAAACATGTCCGCAAGTAATAAAGA
TGACCAACTCATGAAAAATGAGTTCGAAAGTACCTACGACAAAATTGTCGATTCATTCGA
CAATATGGAGCTCCCAAAGGATCTCTTAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
fsrptssdksk*NMSASNKDDQLMKNEFESTYDKIVDSFDNMELPKDLL---
Translated Amino Acid sequence (All Frames) 
Frame A:
ifktdffrqk*ikhvrk**r*pthek*vrkylrqncrfirqygapkgsl---


Frame B:
fsrptssdksk*NMSASNKDDQLMKNEFESTYDKIVDSFDNMELPKDLL---


Frame C:
fqdrllqtkvnktcpqvikmtns*kmsskvpttklsihstiwssqris---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN268 (VFN268Q) /CSM/VF/VFN2-C/VFN268Q.Seq.d/                        295   1e-79
VFD768 (VFD768Q) /CSM/VF/VFD7-C/VFD768Q.Seq.d/                        295   1e-79
SFH138 (SFH138Q) /CSM/SF/SFH1-B/SFH138Q.Seq.d/                        295   1e-79
SFG884 (SFG884Q) /CSM/SF/SFG8-D/SFG884Q.Seq.d/                        295   1e-79
SFE333 (SFE333Q) /CSM/SF/SFE3-B/SFE333Q.Seq.d/                        295   1e-79
SFA624 (SFA624Q) /CSM/SF/SFA6-A/SFA624Q.Seq.d/                        295   1e-79
CHB789 (CHB789Q) /CSM/CH/CHB7-D/CHB789Q.Seq.d/                        295   1e-79
CHA773 (CHA773Q) /CSM/CH/CHA7-D/CHA773Q.Seq.d/                        295   1e-79
CFJ370 (CFJ370Q) /CSM/CF/CFJ3-C/CFJ370Q.Seq.d/                        295   1e-79
CFJ156 (CFJ156Q) /CSM/CF/CFJ1-C/CFJ156Q.Seq.d/                        295   1e-79
own update 2002.12. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U78759|U78759.1 Dictyostelium discoideum IfdA (ifdA) mRNA, partial cds.   218   2e-53  1
BX530075|BX530075.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38   0.14   3
CB568238|CB568238.1 AGENCOURT_12544421 NICHD_Rr_Pit1 Rattus norvegicus cDNA clone IMAGE:6922316 5', mRNA sequence.    44   0.52   1
CG759523|CG759523.1 ZMMBBb0315O07.r ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0315O07 3', genomic survey sequence.    38   0.87   2
CC751077|CC751077.1 ZMMBBb0131P04.r ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0131P04 3', genomic survey sequence.    38   0.96   2
AC084753|AC084753.4 Mus musculus clone RP23-111E15 strain C57BL6/J, WORKING DRAFT SEQUENCE, 14 unordered pieces.    42   2.1    1
AL929569|AL929569.13 Mouse DNA sequence from clone RP23-325I3 on chromosome 2.    42   2.1    1
AY215076|AY215076.1 Mus musculus Rag anti-silencing element, complete sequence.    42   2.1    1
BX005409|BX005409.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-164N12.    36   3.5    5
AC015332|AC015332.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    34   5.6    3
dna update 2003.12.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U78759_1(U78759|pid:none) Dictyostelium discoideum IfdA (ifdA) m...    75   5e-13
(A1D7N3) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    35   0.60
AM920435_674(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    34   1.8
(A7EGL7) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    34   1.8
(Q6CXT4) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    34   1.8
(A6RJ45) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    34   1.8
(Q1DQ20) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    33   2.3
CP001142_274(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...    33   2.3
(Q4WX43) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    33   3.0
(P47943) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...    33   3.0
protein update 2009. 1.10
PSORT 

 psg: 0.75  gvh: 0.04  alm: 0.66  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SFG884 is cyt
5' end seq. ID SFG884F
5' end seq. 
>SFG884F.Seq
ATTTTCAAGACCGACTTCTTCAGACAAAAGTAAATAAAACATGTCCGCAAGTAATAAAGA
TGACCAACTCATGAAAAATGAGTTCGAAAGTACCTACGACAAAATTGTCGATTCATTCGA
CAATATGGAGCTCCCAAAGGATCTCTTAA----------
Length of 5' end seq. 149
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -