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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFH644
Library SF
(Link to library)
Clone ID SFH644
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U03613-1
Original site URL
Representative seq. ID SFH644F
(Link to Original site)
Representative DNA sequence 
>SFH644 (SFH644Q) /CSM/SF/SFH6-B/SFH644Q.Seq.d/
ATACAAACTCAGAACTCATATNGGGNNGAATTATNTTCTTCACAAATTTATTCCACACAA
CAACCACAACAACCACAACAACAACCACAACANCAACAATCAACCTTTTCATCACANCAA
AGGCAANGTTCATCATANGATTTCATATATTCTACNCCACAAATTCATTNTCAAAATTNT
CAAAATTNTCAATTNTCCCAAAATCCATTATATGAGGATTTTATCCATTCTACNCAAAAC
TCATATTCACAANGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
IQTQNSYXXELXSSQIYSTQQPQQPQQQPQXQQSTFSSXQRQXSSXDFIYSTPQIHXQNX
QNXQXSQNPLYEDFIHSTQNSYSQ---
Translated Amino Acid sequence (All Frames) 
Frame A:
IQTQNSYXXELXSSQIYSTQQPQQPQQQPQXQQSTFSSXQRQXSSXDFIYSTPQIHXQNX
QNXQXSQNPLYEDFIHSTQNSYSQ---


Frame B:
yklrthxgxnyxlhkfiphnnhnnhnnnhnxnnqpfhhxkgxvhhxisyilxhkfixkix
kixnxpkihymrilsilxkthihx---


Frame C:
tnselixgxixfftnlfhttttttttttttxtinlfitxkaxfiixfhifyxtnsxskxs
kxsixpksii*gfypfyxklift---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFH644 (SFH644Q) /CSM/SF/SFH6-B/SFH644Q.Seq.d/                        214   5e-55
own update 2001. 6.14
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AP004227|AP004227.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_C12, WORKING DRAFT SEQUENCE, 1 ordered pieces.    40   14     1
AP004881|AP004881.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0496E03.    40   14     1
dna update 2003.12.31
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.309    0.123    0.344

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 218,036,228
protein update 2009. 5.25
PSORT 

 psg: 0.75  gvh: 0.45  alm: 0.71  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  8.0 %: nuclear
	  4.0 %: peroxisomal

>> prediction for SFH644 is mit
5' end seq. ID SFH644F
5' end seq. 
>SFH644F.Seq
ATACAAACTCAGAACTCATATNGGGNNGAATTATNTTCTTCACAAATTTATTCCACACAA
CAACCACAACAACCACAACAACAACCACAACANCAACAATCAACCTTTTCATCACANCAA
AGGCAANGTTCATCATANGATTTCATATATTCTACNCCACAAATTCATTNTCAAAATTNT
CAAAATTNTCAATTNTCCCAAAATCCATTATATGAGGATTTTATCCATTCTACNCAAAAC
TCATATTCACAANG----------
Length of 5' end seq. 254
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -