>SFI109 (SFI109Q) /CSM/SF/SFI1-A/SFI109Q.Seq.d/
XXXXXXXXXXCCTACAGGAGATGACCACCAAAGCATTGAATTTAATCTCACAAANCAATG
AAAATGGTTTCCTTTTAATGGTGGAAGGCTCAAAGATTGATGTGGCAGCTCATATCAATG
ACGCACCCACTCAGATTTGGGAGACTGATGCATTTGATCAAACTTTTAATCTAGTTAGAG
AATGGGCAGAGAAGGATGGTAATACCATTGTAATTGTGACAGCAGATCATGAAACTGGTG
GTCTTACATTAGCAAATCAAATGGTTATCGATGGTAATCCAAAATATTCATGGTCACCAG
AGACATTATTGACAGTGAATAAATCTGCTGATCTCATGGCAGAACTTATCAAAGGTGGTG
CTGATCCAACGAAATTGATTTTCGATAATACAGGTTACACATTAACATCAGATGATTTAA
AAGAAATCAATAGAACCAAGTCTGCCTATTATCTCAATCAAGTGATTGGTCGTATCGTTT
CAAACTATGCTGATATTGGTTTCACCACTGGTGGTCATACTGGTGAGGATGTCAATCTCT
ACACCTTTGGTGATACAATCTCTGAAGGTAAATTTGAAACTCGTCTAAAAGATCATCAAA
CTGAAATAGTTGATAATTATATTGATCCAATCTTAAGAGGTAATATAAATAATATAGATA
TTGCTTCATTTATCATTAAAACTTTAAATTTAGATATTCAATCAATGNCAGAATCANTAA
AAGAANTTTATT

---LQEMTTKALNLISQXNENGFLLMVEGSKIDVAAHINDAPTQIWETDAFDQTFNLVRE
WAEKDGNTIVIVTADHETGGLTLANQMVIDGNPKYSWSPETLLTVNKSADLMAELIKGGA
DPTKLIFDNTGYTLTSDDLKEINRTKSAYYLNQVIGRIVSNYADIGFTTGGHTGEDVNLY
TFGDTISEGKFETRLKDHQTEIVDNYIDPILRGNINNIDIASFIIKTLNLDIQSMXESXK
EXY

Frame A:
---LQEMTTKALNLISQXNENGFLLMVEGSKIDVAAHINDAPTQIWETDAFDQTFNLVRE
WAEKDGNTIVIVTADHETGGLTLANQMVIDGNPKYSWSPETLLTVNKSADLMAELIKGGA
DPTKLIFDNTGYTLTSDDLKEINRTKSAYYLNQVIGRIVSNYADIGFTTGGHTGEDVNLY
TFGDTISEGKFETRLKDHQTEIVDNYIDPILRGNINNIDIASFIIKTLNLDIQSMXESXK
EXY


Frame B:
---yrr*ppkh*i*shkxmkmvsf*wwkaqrlmwqlismthplrfgrlmhliklli*len
gqrrmvipl*l*qqimklvvlh*qikwlsmviqnihghqrhy*q*inlliswqnlskvvl
iqrn*fsiiqvth*hqmi*kksiepslpiisik*lvvsfqtmlilvsplvvilvrmsist
plviqslkvnlklv*kiiklk*liiiliqs*evi*ii*illhlslkl*i*ifnqxqnx*k
xfi


Frame C:
---tgddhqsiefnltxq*kwfpfnggrlkd*cgssyq*rthsdlgd*ci*snf*ss*rm
gregw*yhcncdsrs*nwwsyisksngyrw*skifmvtrdiidse*ic*shgrtyqrwc*
sneidfr*yrlhinir*fkrnq*nqvcllsqssdwsyrfklc*ywfhhwwsyw*gcqslh
lw*ynl*r*i*nsskrssn*ns**ly*snlkr*yk*yrycfiyh*nfkfrysinxrixkr
xl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI109 (SFI109Q) /CSM/SF/SFI1-A/SFI109Q.Seq.d/                       1407   0.0
AFO754 (AFO754Q) /CSM/AF/AFO7-C/AFO754Q.Seq.d/                       1362   0.0
AFE792 (AFE792Q) /CSM/AF/AFE7-D/AFE792Q.Seq.d/                       1344   0.0
CFH657 (CFH657Q) /CSM/CF/CFH6-C/CFH657Q.Seq.d/                       1308   0.0
CHA434 (CHA434Q) /CSM/CH/CHA4-B/CHA434Q.Seq.d/                       1306   0.0
AFA863 (AFA863Q) /CSM/AF/AFA8-C/AFA863Q.Seq.d/                       1269   0.0
SSA425 (SSA425Q) /CSM/SS/SSA4-B/SSA425Q.Seq.d/                       1253   0.0
AFN772 (AFN772Q) /CSM/AF/AFN7-C/AFN772Q.Seq.d/                       1217   0.0
AFL482 (AFL482Q) /CSM/AF/AFL4-D/AFL482Q.Seq.d/                       1211   0.0
CHD578 (CHD578Q) /CSM/CH/CHD5-D/CHD578Q.Seq.d/                       1181   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF158600|AF158600.2 Streptococcus thermophilus bacteriophage Sfi11, complete genome.    38   0.078  3
BX649586|BX649586.4 Zebrafish DNA sequence from clone CH211-1A22 in linkage group 18.    44   0.17   3
AE017012|AE017012.1 Bacillus cereus ATCC 14579 section 15 of 18 of the complete genome.    48   0.17   1
AF320303|AF320303.1 Lactobacillus delbrueckii subsp. bulgaricus alkaline phosphatase gene, complete cds.    48   0.17   1
AF077306|AF077306.1 Streptococcus thermophilus bacteriophage Sfi19 gp157, gp233, putative helicase , gp151, gp271, putative primase, and gp143 genes, complete cds.    38   0.19   2
AF004379|AF004379.1 Streptococcus thermophilus bacteriophage Sfi21 DNA replication module.    38   0.20   2
AP003190|AP003190.2 Clostridium perfringens DNA, complete genome, section 6/10.    44   0.20   8
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    32   0.22   11
AE002101|AE002101.1 Ureaplasma urealyticum section 2 of 59 of the complete genome.    42   0.35   2
AF158601|AF158601.1 Streptococcus thermophilus bacteriophage SFi18 lysin, gp111, gp183, gp47, gp54, gp71, gp145, gp69, gp40, gp229, gp157, gp233, putative helicase, gp151, gp271, putative primase, gp143, gp106, gp89, gp57, gp51, gp66, gp192, putative DNA binding protein, gp99, and gp235 genes, complete cds.    38   0.44   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014299_819(AE014299|pid:none) Shewanella oneidensis MR-1, comp...   125   2e-27
AE016877_4146(AE016877|pid:none) Bacillus cereus ATCC 14579, com...   124   4e-27
AJ248286_98(AJ248286|pid:none) Pyrococcus abyssi complete genome...   123   5e-27
CP000227_4029(CP000227|pid:none) Bacillus cereus Q1, complete ge...   123   6e-27
CP001186_4373(CP001186|pid:none) Bacillus cereus G9842, complete...   122   8e-27
AE016820_111(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...   122   8e-27
CP000444_3310(CP000444|pid:none) Shewanella sp. MR-7, complete g...   122   1e-26
AF154110_1(AF154110|pid:none) Enterococcus faecalis alkaline pho...   122   1e-26
CP000903_4086(CP000903|pid:none) Bacillus weihenstephanensis KBA...   122   1e-26
AB114298_1(AB114298|pid:none) Glomus intraradices GiALP mRNA for...   121   2e-26

 psg: 0.77  gvh: 0.49  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SFI109 is cyt

>SFI109Z.Seq
NNNNNNNNNNCCTACAGGAGATGACCACCAAAGCATTGAATTTAATCTCACAAANCAATG
AAAATGGTTTCCTTTTAATGGTGGAAGGCTCAAAGATTGATGTGGCAGCTCATATCAATG
ACGCACCCACTCAGATTTGGGAGACTGATGCATTTGATCAAACTTTTAATCTAGTTAGAG
AATGGGCAGAGAAGGATGGTAATACCATTGTAATTGTGACAGCAGATCATGAAACTGGTG
GTCTTACATTAGCAAATCAAATGGTTATCGATGGTAATCCAAAATATTCATGGTCACCAG
AGACATTATTGACAGTGAATAAATCTGCTGATCTCATGGCAGAACTTATCAAAGGTGGTG
CTGATCCAACGAAATTGATTTTCGATAATACAGGTTACACATTAACATCAGATGATTTAA
AAGAAATCAATAGAACCAAGTCTGCCTATTATCTCAATCAAGTGATTGGTCGTATCGTTT
CAAACTATGCTGATATTGGTTTCACCACTGGTGGTCATACTGGTGAGGATGTCAATCTCT
ACACCTTTGGTGATACAATCTCTGAAGGTAAATTTGAAACTCGTCTAAAAGATCATCAAA
CTGAAATAGTTGATAATTATATTGATCCAATCTTAAGAGGTAATATAAATAATATAGATA
TTGCTTCATTTATCATTAAAACTTTAAATTTAGATATTCAATCAATGNCAGAATCANTAA
AAGAANTTTATT