SFI365 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFI365
Library	SF (Link to library)
Clone ID	SFI365 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13531-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFI3-C/SFI365Q.Seq.d/
Representative seq. ID	SFI365E (Link to Original site)
Representative DNA sequence	>SFI365 (SFI365Q) /CSM/SF/SFI3-C/SFI365Q.Seq.d/ CTGTTGGCCTACTGGTATTTAAACAATTATTGGCTTGGNAATATTCAATTAGNAATTGGT TGAAGATGGTGAAAGTGGTTTTCGAAAATGGAAACAATCTATTGAATCAAATTCACCTTA TTCTATAATTATTATGGATTTAAATACTCCTGGTGTTGATGGTGCTTCATTACCAATGAG AATAAAAAAAGAATTAGAATTAATGCAACAACATCTACAACAACAACAAGAACAAGAACA ACAACAGCAACAAGAACAACAACAATCCGAGTTACAAAAACAACCAGATGTTGAAAATAA AAATTCATCTCAAAATAATGACAATAATAATAATAATAATAAATCAAATAGTAGTGGTGG TAATCAATGTATATATCGTTCACCAATTATTATGTTAATGCCAATTCAATTTTTAAATTC ACAATTAGAAGATAATTTAAAAGATGCTGGTGTTTGTGCTATACTTTCAAAACCAATTAG AATGAGCCAATTGGCTTGATGTTTTCATGATGTATTTAGGTCCAAATAGTGAACCCAATA ATAATAATAATTATAATACCAATAATGGTAATGGCTATTTGAATGGTGGAGGCGGTGGTG GTGGTAGTGTTAATGGAACTGGAAATGGAACATTACAAGTTGGAATGAGTAATGATGGTG GTAATGGATGTGGTGTAGTCTCTTTTTGGAATAAACAGAGAAGAGCATCCGCTGAAGAAC AAGAACAAGATCCATCGAAATTATTGGGTAAAGTTTTAGTTGTAGATGATAATCATATCA ATATTCAAATCCTTTCTAAAATGCTTCAAACTGTTGGTTGTGAAGTTGATTCAGTGCTAA GTGGTGCCGATGCTTTGGCAAAAATTAATCAATCATCTGGTGACTCTTATGATGCAATAT TCCTTGATATTCAAATGCCCGACATGGATGGATTCCAAGTATCTAGAAAAATTAGAGAAA GAGAGAAAAAAATTCTCATTACCAAGAGTAGCCATCATTGCAACAACAGCAAACGTTTTC AAAGAAGATCAATTAAAATGTTTTGATGCTGGTATGGATGATTTCATTTCAAAACCAATT AAAAGAGCTGAAATTAAAGAAATCATTAAAAAATAGGTAAAAAGGTATCATCAAAG
sequence update	2001.11.24
Translated Amino Acid sequence	vgllvfkqllawxysixnwlkmvkvvfengnnllnqihlilllwiillvlmvlhyqe kknncnniynnnknknnnsnknnnnpsyknnqmlkikihlkimtiiiiiinqivvvv invyivhqllccqfnfihnkiikmlvfvlyfqnqleANWLDVFMMYLGPNSEPNN NNNYNTNNGNGYLNGGGGGGGSVNGTGNGTLQVGMSNDGGNGCGVVSFWNKQRRASAEEQ EQDPSKLLGKVLVVDDNHINIQILSKMLQTVGCEVDSVLSGADALAKINQSSGDSYDAIF LDIQMPDMDGFQVSRKIREREKKILITKSSHHCNNSKRFQRRSIKMFcwygfhfktn ksnrnh*kigkkvssk
Translated Amino Acid sequence (All Frames)	Frame A: llaywylnnywlgniqlxigrwkwfskmetiyikftlfynyygfkyswcwcfitne nkkririnattsttttrtrtttatrtttirvtkttrckkfiskq**ikww smyisftnyyvnansifkftirrfkrcwclcytfktnnepiglmfscivqivnpi iiiiiipimvmaimveavvvvvlmelemehyklevmmvvmdvvslfginreehplkn knkihrnywvkflmiiisifksflkcfkllvvkliqcvvpmlwqklinhlvtlmmqy slifkcptwmdskyleklekerkkfslprvaiiattanvfkedqlkcfdagmddfiskpi kraeikeiikkvkryhq Frame B: cwptgitiiglxifnxlvedgesgfrkwkqsiesnspysiiimdlntpgvdgaslpmr ikkelelmqqhlqqqqeqeqqqqqeqqqselqkqpdvenknssqnndnnnnnnksnssgg nqciyrspiimlmpiqflnsqlednlkdagvcailskpirmsqlacfhdvfrsktq **lyqwwlfewwrrwwwcwnwkwnitswne*wwwmwcslfleteksirrt rtrsieiigsfscrsyqysnpfnasncwlsfsakwcrcfgknsiiwllcni pysnarhgwipsiknrkreknshyqepslqqqqtfskkinnvlmlvwmisfqnql kelklkkslknrkgiik Frame C: vgllvfkqllawxysixnwlkmvkvvfengnnllnqihlilllwiillvlmvlhyqe kknncnniynnnknknnnsnknnnnpsyknnqmlkikihlkimtiiiiiinqivvvv invyivhqllccqfnfihnkiikmlvfvlyfqnqleANWLDVFMMYLGPNSEPNN NNNYNTNNGNGYLNGGGGGGGSVNGTGNGTLQVGMSNDGGNGCGVVSFWNKQRRASAEEQ EQDPSKLLGKVLVVDDNHINIQILSKMLQTVGCEVDSVLSGADALAKINQSSGDSYDAIF LDIQMPDMDGFQVSRKIREREKKILITKSSHHCNNSKRFQRRSIKMFcwygfhfktn* ksnrnh*kigkkvssk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFI365 (SFI365Q) /CSM/SF/SFI3-C/SFI365Q.Seq.d/ 955 0.0 SLC110 (SLC110Q) /CSM/SL/SLC1-A/SLC110Q.Seq.d/ 946 0.0 SFF224 (SFF224Q) /CSM/SF/SFF2-A/SFF224Q.Seq.d/ 946 0.0 VFA144 (VFA144Q) /CSM/VF/VFA1-B/VFA144Q.Seq.d/ 940 0.0 SLB663 (SLB663Q) /CSM/SL/SLB6-C/SLB663Q.Seq.d/ 781 0.0 SSG478 (SSG478Q) /CSM/SS/SSG4-D/SSG478Q.Seq.d/ 317 2e-85 VHA434 (VHA434Q) /CSM/VH/VHA4-B/VHA434Q.Seq.d/ 218 1e-55 SLF537 (SLF537Q) /CSM/SL/SLF5-B/SLF537Q.Seq.d/ 192 8e-48 SSM556 (SSM556Q) /CSM/SS/SSM5-C/SSM556Q.Seq.d/ 48 3e-04 SFB567 (SFB567Q) /CSM/SF/SFB5-C/SFB567Q.Seq.d/ 46 0.001
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AF362373\|AF362373.2 Dictyostelium discoideum histidine kinase DhkL (dhkL) gene, complete cds. 791 0.0 6 AF258796\|AF258796.1 Dictyostelium discoideum hybrid histidine kinase gene, partial cds. 476 0.0 2 AC020161\|AC020161.1 Drosophila melanogaster, * SEQUENCING IN PROGRESS , in ordered pieces. 46 2e-04 3 AC115577\|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 36 4e-04 15 AC115604\|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence. 40 0.009 6 BU019135\|BU019135.1 QHE20F20.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHE20F20, mRNA sequence. 38 0.011 2 AC110959\|AC110959.4 Rattus norvegicus clone CH230-47L7, SEQUENCING IN PROGRESS , 4 unordered pieces. 40 0.011 2 AC106673\|AC106673.4 Rattus norvegicus clone CH230-108J3, WORKING DRAFT SEQUENCE, 8 unordered pieces. 38 0.011 2 AC097388\|AC097388.6 Rattus norvegicus clone CH230-8O5, WORKING DRAFT SEQUENCE, 2 unordered pieces. 38 0.011 2 AC094207\|AC094207.6 Rattus norvegicus clone CH230-3A16, SEQUENCING IN PROGRESS *, 4 unordered pieces. 40 0.011 2
dna update	2004. 1.23
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AF362373_1(AF362373\|pid:none) Dictyostelium discoideum histidine... 231 4e-59 AF258796_1(AF258796\|pid:none) Dictyostelium discoideum hybrid hi... 165 2e-39 CP001019_834(CP001019\|pid:none) Coxiella burnetii CbuG_Q212, com... 66 1e-14 CP000733_1070(CP000733\|pid:none) Coxiella burnetii Dugway 5J108-... 66 1e-14 CP000890_742(CP000890\|pid:none) Coxiella burnetii RSA 331, compl... 66 1e-14 CP000089_4053(CP000089\|pid:none) Dechloromonas aromatica RCB, co... 64 1e-14 CP001101_1689(CP001101\|pid:none) Chlorobium phaeobacteroides BS1... 61 3e-14 CP001108_1854(CP001108\|pid:none) Prosthecochloris aestuarii DSM ... 65 3e-14 CP001614_3051(CP001614\|pid:none) Teredinibacter turnerae T7901, ... 62 7e-14 CP001124_3149(CP001124\|pid:none) Geobacter bemidjiensis Bem, com... 67 1e-13
protein update	2009. 7. 3
PSORT	psg: 0.75 gvh: 0.36 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: nuclear 32.0 %: cytoplasmic 24.0 %: cytoskeletal 4.0 %: mitochondrial >> prediction for SFI365 is nuc
5' end seq. ID	SFI365F
5' end seq.	>SFI365F.Seq CTGTTGGCCTACTGGTATTTAAACAATTATTGGCTTGGNAATATTCAATTAGNAATTGGT TGAAGATGGTGAAAGTGGTTTTCGAAAATGGAAACAATCTATTGAATCAAATTCACCTTA TTCTATAATTATTATGGATTTAAATACTCCTGGTGTTGATGGTGCTTCATTACCAATGAG AATAAAAAAAGAATTAGAATTAATGCAACAACATCTACAACAACAACAAGAACAAGAACA ACAACAGCAACAAGAACAACAACAATCCGAGTTACAAAAACAACCAGATGTTGAAAATAA AAATTCATCTCAAAATAATGACAATAATAATAATAATAATAAATCAAATAGTAGTGGTGG TAATCAATGTATATATCGTTCACCAATTATTATGTTAATGCCAATTCAATTTTTAAATTC ACAATTAGAAGATAATTTAAAAGATGCTGGTGTTTGTGCTATACTTTCAAAACCAATTAG AATGAGCCAATTGGCTTGATGTTTTCATGATGTATTTA----------
Length of 5' end seq.	518
3' end seq. ID	SFI365Z
3' end seq.	>SFI365Z.Seq NNNNNNNNNNTATACTTTCAAAACCAATTAGAATGAGCCAATTGGCTGATGTTTTCATGA TGTATTTAGGTCCAAATAGTGAACCCAATAATAATAATAATTATAATACCAATAATGGTA ATGGCTATTTGAATGGTGGAGGCGGTGGTGGTGGTAGTGTTAATGGAACTGGAAATGGAA CATTACAAGTTGGAATGAGTAATGATGGTGGTAATGGATGTGGTGTAGTCTCTTTTTGGA ATAAACAGAGAAGAGCATCCGCTGAAGAACAAGAACAAGATCCATCGAAATTATTGGGTA AAGTTTTAGTTGTAGATGATAATCATATCAATATTCAAATCCTTTCTAAAATGCTTCAAA CTGTTGGTTGTGAAGTTGATTCAGTGCTAAGTGGTGCCGATGCTTTGGCAAAAATTAATC AATCATCTGGTGACTCTTATGATGCAATATTCCTTGATATTCAAATGCCCGACATGGATG GATTCCAAGTATCTAGAAAAATTAGAGAAAGAGAGAAAAAAATTCTCATTACCAAGAGTA GCCATCATTGCAACAACAGCAAACGTTTTCAAAGAAGATCAATTAAAATGTTTTGATGCT GGTATGGATGATTTCATTTCAAAACCAATTAAAAGAGCTGAAATTAAAGAAATCATTAAA AAATAGGTAAAAAGGTATCATCAAAG
Length of 3' end seq.	686
Connected seq. ID	SFI365P
Connected seq.	>SFI365P.Seq CTGTTGGCCTACTGGTATTTAAACAATTATTGGCTTGGNAATATTCAATTAGNAATTGGT TGAAGATGGTGAAAGTGGTTTTCGAAAATGGAAACAATCTATTGAATCAAATTCACCTTA TTCTATAATTATTATGGATTTAAATACTCCTGGTGTTGATGGTGCTTCATTACCAATGAG AATAAAAAAAGAATTAGAATTAATGCAACAACATCTACAACAACAACAAGAACAAGAACA ACAACAGCAACAAGAACAACAACAATCCGAGTTACAAAAACAACCAGATGTTGAAAATAA AAATTCATCTCAAAATAATGACAATAATAATAATAATAATAAATCAAATAGTAGTGGTGG TAATCAATGTATATATCGTTCACCAATTATTATGTTAATGCCAATTCAATTTTTAAATTC ACAATTAGAAGATAATTTAAAAGATGCTGGTGTTTGTGCTATACTTTCAAAACCAATTAG AATGAGCCAATTGGCTTGATGTTTTCATGATGTATTTA----------TATACTTTCAAA ACCAATTAGAATGAGCCAATTGGCTGATGTTTTCATGATGTATTTAGGTCCAAATAGTGA ACCCAATAATAATAATAATTATAATACCAATAATGGTAATGGCTATTTGAATGGTGGAGG CGGTGGTGGTGGTAGTGTTAATGGAACTGGAAATGGAACATTACAAGTTGGAATGAGTAA TGATGGTGGTAATGGATGTGGTGTAGTCTCTTTTTGGAATAAACAGAGAAGAGCATCCGC TGAAGAACAAGAACAAGATCCATCGAAATTATTGGGTAAAGTTTTAGTTGTAGATGATAA TCATATCAATATTCAAATCCTTTCTAAAATGCTTCAAACTGTTGGTTGTGAAGTTGATTC AGTGCTAAGTGGTGCCGATGCTTTGGCAAAAATTAATCAATCATCTGGTGACTCTTATGA TGCAATATTCCTTGATATTCAAATGCCCGACATGGATGGATTCCAAGTATCTAGAAAAAT TAGAGAAAGAGAGAAAAAAATTCTCATTACCAAGAGTAGCCATCATTGCAACAACAGCAA ACGTTTTCAAAGAAGATCAATTAAAATGTTTTGATGCTGGTATGGATGATTTCATTTCAA AACCAATTAAAAGAGCTGAAATTAAAGAAATCATTAAAAAATAGGTAAAAAGGTATCATC AAAG
Length of connected seq.	1194
Full length Seq ID	SFI365E
Full length Seq.	>SFI365E.Seq CTGTTGGCCTACTGGTATTTAAACAATTATTGGCTTGGNAATATTCAATTAGNAATTGGT TGAAGATGGTGAAAGTGGTTTTCGAAAATGGAAACAATCTATTGAATCAAATTCACCTTA TTCTATAATTATTATGGATTTAAATACTCCTGGTGTTGATGGTGCTTCATTACCAATGAG AATAAAAAAAGAATTAGAATTAATGCAACAACATCTACAACAACAACAAGAACAAGAACA ACAACAGCAACAAGAACAACAACAATCCGAGTTACAAAAACAACCAGATGTTGAAAATAA AAATTCATCTCAAAATAATGACAATAATAATAATAATAATAAATCAAATAGTAGTGGTGG TAATCAATGTATATATCGTTCACCAATTATTATGTTAATGCCAATTCAATTTTTAAATTC ACAATTAGAAGATAATTTAAAAGATGCTGGTGTTTGTGCTATACTTTCAAAACCAATTAG AATGAGCCAATTGGCTTGATGTTTTCATGATGTATTTAGGTCCAAATAGTGAACCCAATA ATAATAATAATTATAATACCAATAATGGTAATGGCTATTTGAATGGTGGAGGCGGTGGTG GTGGTAGTGTTAATGGAACTGGAAATGGAACATTACAAGTTGGAATGAGTAATGATGGTG GTAATGGATGTGGTGTAGTCTCTTTTTGGAATAAACAGAGAAGAGCATCCGCTGAAGAAC AAGAACAAGATCCATCGAAATTATTGGGTAAAGTTTTAGTTGTAGATGATAATCATATCA ATATTCAAATCCTTTCTAAAATGCTTCAAACTGTTGGTTGTGAAGTTGATTCAGTGCTAA GTGGTGCCGATGCTTTGGCAAAAATTAATCAATCATCTGGTGACTCTTATGATGCAATAT TCCTTGATATTCAAATGCCCGACATGGATGGATTCCAAGTATCTAGAAAAATTAGAGAAA GAGAGAAAAAAATTCTCATTACCAAGAGTAGCCATCATTGCAACAACAGCAAACGTTTTC AAAGAAGATCAATTAAAATGTTTTGATGCTGGTATGGATGATTTCATTTCAAAACCAATT AAAAGAGCTGAAATTAAAGAAATCATTAAAAAATAGGTAAAAAGGTATCATCAAAG
Length of full length seq.	1136

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas