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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFI652
Library SF
(Link to library)
Clone ID SFI652
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12907-1
Original site URL
Representative seq. ID SFI652P
(Link to Original site)
Representative DNA sequence 
>SFI652 (SFI652Q) /CSM/SF/SFI6-C/SFI652Q.Seq.d/
CACAACAACAACAACAATAATAATCATCATCATCATTCAAATAATGGTAATTTAATTGAA
AGTAGTAATAATGTAAATAATCAATTAAATGTTTCAAACTATAATAATAATAATTCCAAT
CATTATGATGAAAATAATCAATTCGATATCTTTTTAATTCCAACTGAAATGTTGGTACAT
TTATTATCTTTCTTATCTGCAAATGATCTTTGGAGAATAAGTTTAACTTGTAAAAGAATT
TGGTACATTGTTGATGTTTTCAAATTTTGGGAATTATTATTTGAACAAACTTGTCCAAGA
ATATATTATGCTATGCAATTTAATTCAAGATGGTCAAATCCAACTTCATTTCAATCAAAA
ATGATTTTATGTTATATCGATAGATTACCAACTGATAATTATAAAAATTTTGATAAATCA
GATGAAAGTGGTCAAATTAAAAAAATTATTGGAGTAATGAATGAAAATTTACATAATCCA
ATGATTTTAAGAGXXXXXXXXXXCGAGCAAGGTGGTATTCAATTGATATTACAAGCAATG
AAAAATCATATGATGAATCCAGGTGTACAATATAATACAAGCTTTGTATTGAGAAATCTT
GCACGTAATGATGTTAGTGAAAGTAGAGTGGCAATTGAGGGTGGTATTCAATCGATTGCA
ACCGCAATGAAAAATCATCCAAATCATATTGGAATTCAAACACAAGGTTGTGGTGCCCTA
AGAAATTTAGGTTGTAACGATAGTAATAAGGTTTTAAGTGCAAAAGAAGGTGGTATCGGT
TTAATTTTACGTGCAATGAGATCCTTTTCTTCTCATCCTGATTTACAATTGAATGGTTGT
GGTGCTCTTAGAAATTTGGCTCGTAATGAAGATAATAAAAATATGATCTCTCGTCAAAAT
GGTATTCAATTGGTTTTGGGTGCAATGTCAAATCATCCAGATGATCCAGACGTTCAAGAT
GAAGGTTGTGCTGCTCTCATCAATTTAGCTTATCAAGATGAAGCAAATGAAGAAACAATT
GCTCGTGAAGGTGGTATCAATTTAATCCTAAAGGCAATGAGAAATCATCCTTTCCATAGT
GGTGTTCAAATGCAAGGTAGAGGTGCCTTGAAAAACCTTTCATGTAATCCTAAAAATAAA
TTAACAATAGCTCGTTCTGGTGGTATTGAATTAATGAATATCGCTATGCAAAATCATCCA
AATTTTGCAAATAGATTCTTAGAATTATCAAGAATACTTCAAGTAGCATTAGAAGNANGA
AATATTTAAAA
sequence update 2001.11.22
Translated Amino Acid sequence 
HNNNNNNNHHHHSNNGNLIESSNNVNNQLNVSNYNNNNSNHYDENNQFDIFLIPTEMLVH
LLSFLSANDLWRISLTCKRIWYIVDVFKFWELLFEQTCPRIYYAMQFNSRWSNPTSFQSK
MILCYIDRLPTDNYKNFDKSDESGQIKKIIGVMNENLHNPMILR---

---EQGGIQLILQAMKNHMMNPGVQYNTSFVLRNLARNDVSESRVAIEGGIQSIATAMKN
HPNHIGIQTQGCGALRNLGCNDSNKVLSAKEGGIGLILRAMRSFSSHPDLQLNGCGALRN
LARNEDNKNMISRQNGIQLVLGAMSNHPDDPDVQDEGCAALINLAYQDEANEETIAREGG
INLILKAMRNHPFHSGVQMQGRGALKNLSCNPKNKLTIARSGGIELMNIAMQNHPNFANR
FLELSRILQVALEXXNI*
Translated Amino Acid sequence (All Frames) 
Frame A:
HNNNNNNNHHHHSNNGNLIESSNNVNNQLNVSNYNNNNSNHYDENNQFDIFLIPTEMLVH
LLSFLSANDLWRISLTCKRIWYIVDVFKFWELLFEQTCPRIYYAMQFNSRWSNPTSFQSK
MILCYIDRLPTDNYKNFDKSDESGQIKKIIGVMNENLHNPMILR---

---rarwysiditsneksydesrcti*yklcieksct**c**k*sgn*gwysidcnrnek
ssksywnsntrlwcpkkfrl*r***gfkckrrwyrfnftcneilffss*ftiewlwcs*k
fgs**r**kydlsskwysigfgcnvkssr*srrsr*rlccshqfslsr*sk*rnncs*rw
yqfnpkgnekssfp*wcsnar*rclekpfm*s*k*innssfwwy*ineyryaksskfck*
ilriikntsssirxxkylk

Frame B:
tttttiiiiiiiqimvi*lkvvim*iin*mfqtiiiiipiimmkiinsisf*fqlkcwyi
yylsylqmifge*v*lvkefgtllmfsnfgnyylnklvqeyimlcnliqdgqiqlhfnqk
*fyvisidyqliiikilinqmkvvklkklle**mkiyiiq*f*e---

---EQGGIQLILQAMKNHMMNPGVQYNTSFVLRNLARNDVSESRVAIEGGIQSIATAMKN
HPNHIGIQTQGCGALRNLGCNDSNKVLSAKEGGIGLILRAMRSFSSHPDLQLNGCGALRN
LARNEDNKNMISRQNGIQLVLGAMSNHPDDPDVQDEGCAALINLAYQDEANEETIAREGG
INLILKAMRNHPFHSGVQMQGRGALKNLSCNPKNKLTIARSGGIELMNIAMQNHPNFANR
FLELSRILQVALEXXNI*

Frame C:
qqqqq**ssssfk*w*fn*k***ck*sikcfkl****fqsl**k*sirylfnsn*nvgtf
iiflick*slenkfnl*knlvhc*cfqilgiii*tnlsknilcyai*fkmvksnfisikn
dfmlyr*itn**l*kf**ir*kwsn*knywsne*kft*sndfk---

---skvvfn*yykq*kii**iqvyniiqaly*eilhvmmlvkvewqlrvvfnrlqpq*ki
iqiilefkhkvvvp*ei*vvtivirf*vqkkvvsv*fyvq*dpflliliyn*mvvvllei
wlvmkiiki*slvkmvfnwfwvqcqiiqmiqtfkmkvvllssi*likmkqmkkqllvkvv
si*s*rq*eiilsivvfkckvevp*ktfhvilkin*q*lvlvvln**islckiiqilqid
s*nyqeyfk*h*kxeifk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI652 (SFI652Q) /CSM/SF/SFI6-C/SFI652Q.Seq.d/                       2181   0.0
SSF518 (SSF518Q) /CSM/SS/SSF5-A/SSF518Q.Seq.d/                       1491   0.0
AFE519 (AFE519Q) /CSM/AF/AFE5-A/AFE519Q.Seq.d/                       1421   0.0
CHB708 (CHB708Q) /CSM/CH/CHB7-A/CHB708Q.Seq.d/                       1374   0.0
CHA296 (CHA296Q) /CSM/CH/CHA2-D/CHA296Q.Seq.d/                       1326   0.0
CHF813 (CHF813Q) /CSM/CH/CHF8-A/CHF813Q.Seq.d/                       1233   0.0
CHQ596 (CHQ596Q) /CSM/CH/CHQ5-D/CHQ596Q.Seq.d/                       1116   0.0
SSE722 (SSE722Q) /CSM/SS/SSE7-A/SSE722Q.Seq.d/                       1037   0.0
CHA696 (CHA696Q) /CSM/CH/CHA6-D/CHA696Q.Seq.d/                        708   0.0
CHB656 (CHB656Q) /CSM/CH/CHB6-C/CHB656Q.Seq.d/                        609   e-173
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF305417|AF305417.1 Dictyostelium discoideum Aardvark (aar) mRNA, complete cds.  1491   0.0    7
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           46   3e-14  19
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence.    46   5e-11  14
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence.    46   2e-10  17
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    40   2e-10  16
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    46   3e-10  14
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    46   4e-10  15
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           46   7e-10  20
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    44   1e-09  16
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence.    46   3e-09  16
dna update 2004. 1. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC074259_24(AC074259|pid:none) Trypanosoma brucei chromosome 6 c...   102   3e-20
BC166821_1(BC166821|pid:none) Rattus norvegicus armadillo repeat...    85   5e-15
BC005754_1(BC005754|pid:none) Mus musculus armadillo repeat cont...    83   2e-14
BC030077_1(BC030077|pid:none) Mus musculus armadillo repeat cont...    83   2e-14
AK081550_1(AK081550|pid:none) Mus musculus 16 days embryo head c...    83   2e-14
AK049351_1(AK049351|pid:none) Mus musculus ES cells cDNA, RIKEN ...    82   4e-14
(O22161) RecName: Full=Protein ARABIDILLO-1; AltName: Full=F-box...    81   7e-14
AM989984_51(AM989984|pid:none) Zygosaccharomyces rouxii strain C...    80   1e-13
BC076906_1(BC076906|pid:none) Xenopus tropicalis MGC89050 protei...    80   1e-13
(Q9M224) RecName: Full=Protein ARABIDILLO-2;  &AL138646_1(AL1386...    79   4e-13
protein update 2009. 5.26
PSORT 

 psg: 0.65  gvh: 0.32  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SFI652 is cyt
5' end seq. ID SFI652F
5' end seq. 
>SFI652F.Seq
CACAACAACAACAACAATAATAATCATCATCATCATTCAAATAATGGTAATTTAATTGAA
AGTAGTAATAATGTAAATAATCAATTAAATGTTTCAAACTATAATAATAATAATTCCAAT
CATTATGATGAAAATAATCAATTCGATATCTTTTTAATTCCAACTGAAATGTTGGTACAT
TTATTATCTTTCTTATCTGCAAATGATCTTTGGAGAATAAGTTTAACTTGTAAAAGAATT
TGGTACATTGTTGATGTTTTCAAATTTTGGGAATTATTATTTGAACAAACTTGTCCAAGA
ATATATTATGCTATGCAATTTAATTCAAGATGGTCAAATCCAACTTCATTTCAATCAAAA
ATGATTTTATGTTATATCGATAGATTACCAACTGATAATTATAAAAATTTTGATAAATCA
GATGAAAGTGGTCAAATTAAAAAAATTATTGGAGTAATGAATGAAAATTTACATAATCCA
ATGATTTTAAGAG----------
Length of 5' end seq. 493
3' end seq. ID SFI652Z
3' end seq. 
>SFI652Z.Seq
NNNNNNNNNNCGAGCAAGGTGGTATTCAATTGATATTACAAGCAATGAAAAATCATATGA
TGAATCCAGGTGTACAATATAATACAAGCTTTGTATTGAGAAATCTTGCACGTAATGATG
TTAGTGAAAGTAGAGTGGCAATTGAGGGTGGTATTCAATCGATTGCAACCGCAATGAAAA
ATCATCCAAATCATATTGGAATTCAAACACAAGGTTGTGGTGCCCTAAGAAATTTAGGTT
GTAACGATAGTAATAAGGTTTTAAGTGCAAAAGAAGGTGGTATCGGTTTAATTTTACGTG
CAATGAGATCCTTTTCTTCTCATCCTGATTTACAATTGAATGGTTGTGGTGCTCTTAGAA
ATTTGGCTCGTAATGAAGATAATAAAAATATGATCTCTCGTCAAAATGGTATTCAATTGG
TTTTGGGTGCAATGTCAAATCATCCAGATGATCCAGACGTTCAAGATGAAGGTTGTGCTG
CTCTCATCAATTTAGCTTATCAAGATGAAGCAAATGAAGAAACAATTGCTCGTGAAGGTG
GTATCAATTTAATCCTAAAGGCAATGAGAAATCATCCTTTCCATAGTGGTGTTCAAATGC
AAGGTAGAGGTGCCTTGAAAAACCTTTCATGTAATCCTAAAAATAAATTAACAATAGCTC
GTTCTGGTGGTATTGAATTAATGAATATCGCTATGCAAAATCATCCAAATTTTGCAAATA
GATTCTTAGAATTATCAAGAATACTTCAAGTAGCATTAGAAGNANGAAATATTTAAAA
Length of 3' end seq. 778
Connected seq. ID SFI652P
Connected seq. 
>SFI652P.Seq
CACAACAACAACAACAATAATAATCATCATCATCATTCAAATAATGGTAATTTAATTGAA
AGTAGTAATAATGTAAATAATCAATTAAATGTTTCAAACTATAATAATAATAATTCCAAT
CATTATGATGAAAATAATCAATTCGATATCTTTTTAATTCCAACTGAAATGTTGGTACAT
TTATTATCTTTCTTATCTGCAAATGATCTTTGGAGAATAAGTTTAACTTGTAAAAGAATT
TGGTACATTGTTGATGTTTTCAAATTTTGGGAATTATTATTTGAACAAACTTGTCCAAGA
ATATATTATGCTATGCAATTTAATTCAAGATGGTCAAATCCAACTTCATTTCAATCAAAA
ATGATTTTATGTTATATCGATAGATTACCAACTGATAATTATAAAAATTTTGATAAATCA
GATGAAAGTGGTCAAATTAAAAAAATTATTGGAGTAATGAATGAAAATTTACATAATCCA
ATGATTTTAAGAG----------CGAGCAAGGTGGTATTCAATTGATATTACAAGCAATG
AAAAATCATATGATGAATCCAGGTGTACAATATAATACAAGCTTTGTATTGAGAAATCTT
GCACGTAATGATGTTAGTGAAAGTAGAGTGGCAATTGAGGGTGGTATTCAATCGATTGCA
ACCGCAATGAAAAATCATCCAAATCATATTGGAATTCAAACACAAGGTTGTGGTGCCCTA
AGAAATTTAGGTTGTAACGATAGTAATAAGGTTTTAAGTGCAAAAGAAGGTGGTATCGGT
TTAATTTTACGTGCAATGAGATCCTTTTCTTCTCATCCTGATTTACAATTGAATGGTTGT
GGTGCTCTTAGAAATTTGGCTCGTAATGAAGATAATAAAAATATGATCTCTCGTCAAAAT
GGTATTCAATTGGTTTTGGGTGCAATGTCAAATCATCCAGATGATCCAGACGTTCAAGAT
GAAGGTTGTGCTGCTCTCATCAATTTAGCTTATCAAGATGAAGCAAATGAAGAAACAATT
GCTCGTGAAGGTGGTATCAATTTAATCCTAAAGGCAATGAGAAATCATCCTTTCCATAGT
GGTGTTCAAATGCAAGGTAGAGGTGCCTTGAAAAACCTTTCATGTAATCCTAAAAATAAA
TTAACAATAGCTCGTTCTGGTGGTATTGAATTAATGAATATCGCTATGCAAAATCATCCA
AATTTTGCAAATAGATTCTTAGAATTATCAAGAATACTTCAAGTAGCATTAGAAGNANGA
AATATTTAAAA
Length of connected seq. 1261
Full length Seq ID -
Full length Seq. -
Length of full length seq. -