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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFK524
Library SF
(Link to library)
Clone ID SFK524
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15607-1
Original site URL
Representative seq. ID SFK524F
(Link to Original site)
Representative DNA sequence 
>SFK524 (SFK524Q) /CSM/SF/SFK5-A/SFK524Q.Seq.d/
TCAGTGGCATCTTATTTTGTAAATCCATTAAAATATTCAGTTTGTTCAGAAGGTCATATG
GTTTTAGATGCATCACAAGATATTTATCCACCACCAAAAACCACAATTGATGAAGAGTCA
ATGGGTGGCGGAGGTAATGGTATTCCATTGGAAGATTTTGGTAATGGTGGTAAAGAAGAA
AAACATTTCGATGATAAAATTGGTGGATTTATATTAGATGGTGCAACAACAACAACAGCA
GATTTCGAATCGGATGAAGTTGGAGTTGAAGCAGGTAATGATATTAAAGTAATAAAAAGT
AAACXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
SVASYFVNPLKYSVCSEGHMVLDASQDIYPPPKTTIDEESMGGGGNGIPLEDFGNGGKEE
KHFDDKIGGFILDGATTTTADFESDEVGVEAGNDIKVIKSK---
Translated Amino Acid sequence (All Frames) 
Frame A:
SVASYFVNPLKYSVCSEGHMVLDASQDIYPPPKTTIDEESMGGGGNGIPLEDFGNGGKEE
KHFDDKIGGFILDGATTTTADFESDEVGVEAGNDIKVIKSK---


Frame B:
qwhlil*ih*niqfvqkviwf*mhhkifihhqkpqlmksqwvaevmvfhwkilvmvvkkk
nismiklvdly*mvqqqqqqisnrmklelkqvmilk**kv---


Frame C:
sgilfcksikifslfrrsygfrcitrylsttknhn**rvngwrr*wysigrfw*ww*rrk
tfr**nwwiyirwcnnnnsrfrig*sws*sr**y*snkk*---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK524 (SFK524Q) /CSM/SF/SFK5-A/SFK524Q.Seq.d/                        603   e-172
SFK472 (SFK472Q) /CSM/SF/SFK4-C/SFK472Q.Seq.d/                        603   e-172
SFD685 (SFD685Q) /CSM/SF/SFD6-D/SFD685Q.Seq.d/                        603   e-172
CHB457 (CHB457Q) /CSM/CH/CHB4-C/CHB457Q.Seq.d/                        161   8e-39
SHF741 (SHF741Q) /CSM/SH/SHF7-B/SHF741Q.Seq.d/                         40   0.019
CHS392 (CHS392Q) /CSM/CH/CHS3-D/CHS392Q.Seq.d/                         40   0.019
CHH371 (CHH371Q) /CSM/CH/CHH3-C/CHH371Q.Seq.d/                         40   0.019
AHL606 (AHL606Q) /CSM/AH/AHL6-A/AHL606Q.Seq.d/                         40   0.019
VSJ123 (VSJ123Q) /CSM/VS/VSJ1-A/VSJ123Q.Seq.d/                         38   0.076
VSF374 (VSF374Q) /CSM/VS/VSF3-D/VSF374Q.Seq.d/                         38   0.076
own update 2004. 7.23
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ390381) Dictyostelium discoideum cDNA clone:dds22o05, 5' ...   603   e-168  1
(BJ390250) Dictyostelium discoideum cDNA clone:dds21p18, 5' ...   603   e-168  1
(BJ388296) Dictyostelium discoideum cDNA clone:dds8i22, 5' e...   603   e-168  1
(BJ362995) Dictyostelium discoideum cDNA clone:ddc24b16, 5' ...   161   2e-35  1
(AC191090) Zea mays chromosome 1 clone CH201-90G18; ZMMBBc00...    40   0.035  2
(EJ341099) 1092963516682 Global-Ocean-Sampling_GS-28-01-01-1...    50   0.046  1
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    38   0.081  5
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   0.10   5
(AC004391) Homo sapiens Cosmid g5129s018, complete sequence.       32   0.18   5
(CP000745) Methanococcus maripaludis C7, complete genome.          48   0.18   1
dna update 2009. 1. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP007255_2001(AP007255|pid:none) Magnetospirillum magneticum AMB...    39   0.055
AP007255_1268(AP007255|pid:none) Magnetospirillum magneticum AMB...    38   0.12
AF546148_1(AF546148|pid:none) Streptomyces kaniharaensis PksE (p...    32   5.1
DQ087596_1(DQ087596|pid:none) Leishmania amazonensis telomere-bi...    32   6.7
CP001291_1220(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    32   6.7
EF599364_1(EF599364|pid:none) Pichia burtonii isolate WM 794 cyt...    32   6.7
U64916_1(U64916|pid:none) Glycine max farnesylated protein GMFP5...    32   6.7
EU344044_1(EU344044|pid:none) Candida insectorum strain WM 07.44...    32   6.7
CT005272_678(CT005272|pid:none) Leishmania major strain Friedlin...    32   8.7
CP001145_1055(CP001145|pid:none) Coprothermobacter proteolyticus...    32   8.7
protein update 2009. 5.27
PSORT 

 psg: 0.70  gvh: 0.34  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for SFK524 is nuc
5' end seq. ID SFK524F
5' end seq. 
>SFK524F.Seq
TCAGTGGCATCTTATTTTGTAAATCCATTAAAATATTCAGTTTGTTCAGAAGGTCATATG
GTTTTAGATGCATCACAAGATATTTATCCACCACCAAAAACCACAATTGATGAAGAGTCA
ATGGGTGGCGGAGGTAATGGTATTCCATTGGAAGATTTTGGTAATGGTGGTAAAGAAGAA
AAACATTTCGATGATAAAATTGGTGGATTTATATTAGATGGTGCAACAACAACAACAGCA
GATTTCGAATCGGATGAAGTTGGAGTTGAAGCAGGTAATGATATTAAAGTAATAAAAAGT
AAAC----------
Length of 5' end seq. 304
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -