>SFL406 (SFL406Q) /CSM/SF/SFL4-A/SFL406Q.Seq.d/
XXXXXXXXXXAGTTGGCCTCAACTTAATAGATCATGTCGTTTCAAATCATGCAGATAAAA
TGATGGAACCAGTCGTTCAATGGTACGAAAAGGTTTTACAATTCCACCGTTTCTGGTCAG
TTGATGACAAAACCATTCATACCGAATATTCATCATTAAGATCAGTCGTAGTTGCTGATA
AGTCTGAAAAAGTTAAATTACCAATTAATGAACCAGCCAATGGTATTAGAAAGAGTCAAA
TTCAAGAATACGTAGATTTCTACAATGGTGCTGGTGTTCAACATATCGCCTTAAAGACTG
ATAACATCATTGATGCTATCTCAAAATTAAGATCTCGTGGTGTCTCTTTCCTCACTGTTC
CAAAAACATACTATACATCACTCAGAGAGAAATTACAACACTCTTCATTAGAAATTAAAG
AAGATTTGGACACTTTAGAGAAATTACACATTTTAATCGATTATGATGACAAAGGTTATC
TTTTACAAATCTTTACAAATAATGTTGAAGATAAACCAACTGTTTTCTTTGAAATTATCC
AAAGAAACAACCATGATGGTTTCGGTGCTGGTAACTTTAAATCCCTCTTTGAAGCAATCG
AAAGACAACAAGAAACTCGTGGAAACTTATAGGTGTGTCTCAATTACAAATGTTCTTATA
TAACTAATAACATTACAATATATCAAAATAAA

---VGLNLIDHVVSNHADKMMEPVVQWYEKVLQFHRFWSVDDKTIHTEYSSLRSVVVADK
SEKVKLPINEPANGIRKSQIQEYVDFYNGAGVQHIALKTDNIIDAISKLRSRGVSFLTVP
KTYYTSLREKLQHSSLEIKEDLDTLEKLHILIDYDDKGYLLQIFTNNVEDKPTVFFEIIQ
RNNHDGFGAGNFKSLFEAIERQQETRGNL*vclnykcsyitnnitiyqnk

Frame A:
---VGLNLIDHVVSNHADKMMEPVVQWYEKVLQFHRFWSVDDKTIHTEYSSLRSVVVADK
SEKVKLPINEPANGIRKSQIQEYVDFYNGAGVQHIALKTDNIIDAISKLRSRGVSFLTVP
KTYYTSLREKLQHSSLEIKEDLDTLEKLHILIDYDDKGYLLQIFTNNVEDKPTVFFEIIQ
RNNHDGFGAGNFKSLFEAIERQQETRGNL*vclnykcsyitnnitiyqnk


Frame B:
---last**imsfqimqik*wnqsfngtkrfynstvsgqlmtkpfipnihh*dqs*llis
lkklnyqlmnqpmvlervkfknt*istmvlvfnisp*rlitslmlsqn*dlvvslsslfq
khtihhsernyntlh*klkkiwtl*rnytf*simmtkvifykslqimlkinqlfslklsk
ettmmvsvlvtlnpslkqskdnkklvetyrcvsitnvli*litlqyiki


Frame C:
---wpqlnrscrfkscr*ndgtsrsmvrkgftippflvs**qnhsyrifiikisrsc**v
*ks*itn**tsqwy*kesnsrirrflqwcwcstyrlkd**hh*cylkikiswclfphcsk
nilyitqreittlfirn*rrfghfreithfnrl**qrlsftnlyk*c*r*tncfl*nypk
kqp*wfrcw*l*ipl*snrkttrnswkligvsqlqmflyn**hynisk*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFL406 (SFL406Q) /CSM/SF/SFL4-A/SFL406Q.Seq.d/                       1352   0.0
VFJ537 (VFJ537Q) /CSM/VF/VFJ5-B/VFJ537Q.Seq.d/                       1330   0.0
CFG888 (CFG888Q) /CSM/CF/CFG8-D/CFG888Q.Seq.d/                       1324   0.0
VFK407 (VFK407Q) /CSM/VF/VFK4-A/VFK407Q.Seq.d/                       1312   0.0
CFG395 (CFG395Q) /CSM/CF/CFG3-D/CFG395Q.Seq.d/                       1312   0.0
CFB319 (CFB319Q) /CSM/CF/CFB3-A/CFB319Q.Seq.d/                       1312   0.0
VFA816 (VFA816Q) /CSM/VF/VFA8-A/VFA816Q.Seq.d/                       1308   0.0
CFA389 (CFA389Q) /CSM/CF/CFA3-D/CFA389Q.Seq.d/                       1304   0.0
CFG634 (CFG634Q) /CSM/CF/CFG6-B/CFG634Q.Seq.d/                       1302   0.0
AFJ512 (AFJ512Q) /CSM/AF/AFJ5-A/AFJ512Q.Seq.d/                       1300   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116978|AC116978.1 Dictyostelium discoideum chromosome 2 map 4846697-4874480 strain AX4, *** SEQUENCING IN PROGRESS ***.  1283   0.0    3
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.  1283   0.0    11
BI322343|BI322343.1 kx19h02.y3 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:HPPD_CAEEL Q22633 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE ;, mRNA sequence.    42   3e-10  4
BI502176|BI502176.1 kt86c08.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:HPPD_CAEEL Q22633 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE ;, mRNA sequence.    36   6e-10  5
L38493|L38493.1 Coccidioides immitis T-cell reactive protein (trcP) gene exons 1-4, complete cds.    52   1e-07  2
BM395514|BM395514.1 50072-2-9-E12.r.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    64   3e-06  1
M59429|M59429.1 T. thermophila F-antigen (tfa) gene, complete cds.    46   0.002  3
AL929345|AL929345.9 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-211H10.    36   0.003  9
AC118979|AC118979.7 Rattus norvegicus clone CH230-313J16, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    50   0.020  2
AL671321|AL671321.16 Mouse DNA sequence from clone RP23-274I19 on chromosome X.    34   0.039  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76NV5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   414   e-114
AM114773_1(AM114773|pid:none) Platynereis dumerilii partial mRNA...   295   1e-78
AE014296_3563(AE014296|pid:none) Drosophila melanogaster chromos...   291   1e-77
S32821(S32821;S35890;S35889)4-hydroxyphenylpyruvate dioxygenase ...   285   1e-75
(Q02110) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   285   1e-75
BC046075_1(BC046075|pid:none) Danio rerio zgc:56326, mRNA (cDNA ...   284   2e-75
(Q6TGZ5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   284   2e-75
BC153801_1(BC153801|pid:none) Xenopus laevis hypothetical protei...   281   1e-74
BC077167_1(BC077167|pid:none) Danio rerio 4-hydroxyphenylpyruvat...   280   2e-74
(P32754) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   279   6e-74

 psg: 0.75  gvh: 0.33  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for SFL406 is cyt

>SFL406Z.Seq
----------AGTTGGCCTCAACTTAATAGATCATGTCGTTTCAAATCATGCAGATAAAA
TGATGGAACCAGTCGTTCAATGGTACGAAAAGGTTTTACAATTCCACCGTTTCTGGTCAG
TTGATGACAAAACCATTCATACCGAATATTCATCATTAAGATCAGTCGTAGTTGCTGATA
AGTCTGAAAAAGTTAAATTACCAATTAATGAACCAGCCAATGGTATTAGAAAGAGTCAAA
TTCAAGAATACGTAGATTTCTACAATGGTGCTGGTGTTCAACATATCGCCTTAAAGACTG
ATAACATCATTGATGCTATCTCAAAATTAAGATCTCGTGGTGTCTCTTTCCTCACTGTTC
CAAAAACATACTATACATCACTCAGAGAGAAATTACAACACTCTTCATTAGAAATTAAAG
AAGATTTGGACACTTTAGAGAAATTACACATTTTAATCGATTATGATGACAAAGGTTATC
TTTTACAAATCTTTACAAATAATGTTGAAGATAAACCAACTGTTTTCTTTGAAATTATCC
AAAGAAACAACCATGATGGTTTCGGTGCTGGTAACTTTAAATCCCTCTTTGAAGCAATCG
AAAGACAACAAGAAACTCGTGGAAACTTATAGGTGTGTCTCAATTACAAATGTTCTTATA
TAACTAATAACATTACAATATATCAAAATAAA