>SHA672 (SHA672Q) /CSM/SH/SHA6-C/SHA672Q.Seq.d/
XXXXXXXXXXCCAAAGAAGACAAATCGTCGACAAAATCGCTCCAAGTGTAGAGACCTTTG
CCTGTCATGTCTATGGTATTCATGGTATTCAAAAGCTACTTCAATACCTCTCACCCGGTC
AAGTCGAATCCATCATTGCCTCCATCAAGGGTAAGGTAATACAATTATCAAAGGATAACA
AGGGTAACTACTTGATTCAATCATTTTTGAAACAATTTTCACCAGAGGTCAATCAATTTG
TTTGTGATGCAATCATGGGTAATATTGAGGAGATTTTGTACCCATAAAGTTGGCTGTACA
GTCGTCAATCGTTGTATCGATAATGCCAATCCTGAGCAACTAGAGAAATTGGTCGATAAA
ATCACTGAACATTCCCTCAAATTGGTACAAGATCAATTTGGCAACTATGTCGTTCAACAT
CTCCTCTCAAAGAATAAAGCTTACTCTTCAAAATTGATTGTCTCACTCAAAGATAACATT
GCTGAATTATCCATCCAAAAGTTTAGCTCCAATGTCATTGAAAAGTGTTTACAATTGGCT
GATACTCCAACCTATGAATTGATCATCAAGGCTTTGACAGAAGCTGATATCCTCAGTTTG
CTTCAAGATAAATATGCCAACTTCGTGATCCAAACCGCTTTGGACGTCAGTAATGATACT
CAACACGCAAAACTTGTAAAAATTATTGTACCCTACATTCATCAAATTAAGACTCCTTAC
GTAATTCATATTCAAAAGAAGATACTTCAAGTTTACAA

---kedksstkslqv*rplpvmsmvfmvfksyfntshpvksnpslppsrvr*ynyqritr
vtt*fnhf*NNFHQRSINLFVMQSWVILRRFCTHKVGCTVVNRCIDNANPEQLEKLVDKI
TEHSLKLVQDQFGNYVVQHLLSKNKAYSSKLIVSLKDNIAELSIQKFSSNVIEKCLQLAD
TPTYELIIKALTEADILSLLQDKYANFVIQTALDVSNDTQHAKLVKIIVPYIHQIKTPYV
IHIQKKILQVY

Frame A:
---qrrqivdkiapsvetfachvygihgiqkllqylspgqvesiiasikgkviqlskdnk
gnyliqsflkqfspevnqfvcdaimgnieeilyp*swlysrqslyr*cqs*atreigr*n
h*tfpqigtrsiwqlcrstsplke*sllfkidcltqr*hc*iihpkv*lqch*kvftig*
ysnl*idhqgfdrs*ypqfasr*icqlrdpnrfgrq**ystrktcknyctlhssn*dslr
nsyskedtsslq


Frame B:
---kedksstkslqv*rplpvmsmvfmvfksyfntshpvksnpslppsrvr*ynyqritr
vtt*fnhf*NNFHQRSINLFVMQSWVILRRFCTHKVGCTVVNRCIDNANPEQLEKLVDKI
TEHSLKLVQDQFGNYVVQHLLSKNKAYSSKLIVSLKDNIAELSIQKFSSNVIEKCLQLAD
TPTYELIIKALTEADILSLLQDKYANFVIQTALDVSNDTQHAKLVKIIVPYIHQIKTPYV
IHIQKKILQVY


Frame C:
---kktnrrqnrskcrdlclsclwyswyskatsipltrssrihhclhqg*gntiikg*qg
*lldsiifetiftrgqsicl*cnhg*y*gdfvpiklavqssivvsimpilsn*rnwsiks
lnipsnwykinlatmsfnissqrikltlqn*lshskitllnypskslapmslksvynwli
lqpmn*ssrl*qklissvcfkinmpts*skplwtsvmilntqnl*kllyptfiklrllt*
fifkrryfkft

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA672 (SHA672Q) /CSM/SH/SHA6-C/SHA672Q.Seq.d/                       1483   0.0
SFA408 (SFA408Q) /CSM/SF/SFA4-A/SFA408Q.Seq.d/                       1247   0.0
AFJ353 (AFJ353Q) /CSM/AF/AFJ3-C/AFJ353Q.Seq.d/                       1045   0.0
CHR212 (CHR212Q) /CSM/CH/CHR2-A/CHR212Q.Seq.d/                       1041   0.0
CFB402 (CFB402Q) /CSM/CF/CFB4-A/CFB402Q.Seq.d/                        710   0.0
CHB837 (CHB837Q) /CSM/CH/CHB8-B/CHB837Q.Seq.d/                        325   6e-88
SSF609 (SSF609Q) /CSM/SS/SSF6-A/SSF609Q.Seq.d/                         38   0.19
SLJ490 (SLJ490Q) /CSM/SL/SLJ4-D/SLJ490Q.Seq.d/                         38   0.19
SLE718 (SLE718Q) /CSM/SL/SLE7-A/SLE718Q.Seq.d/                         38   0.19
SLE266 (SLE266Q) /CSM/SL/SLE2-C/SLE266Q.Seq.d/                         38   0.19

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CF820078|CF820078.1 EST697460 Coccidioides posadasii saprobic phase cDNA library, 2 tosequence.    46   0.003  2
CT038174|CT038174.1 Sus scrofa genomic clone CH242-6P16, genomic survey sequence.    42   0.038  2
AC173557|AC173557.1 Strongylocentrotus purpuratus clone R3-1009I15, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces.    48   0.26   1
AC164898|AC164898.1 Bos taurus clone CH240-155D1, *** SEQUENCING IN PROGRESS ***, 21 unordered pieces.    34   3.3    3
CK863899|CK863899.1 35191 In vitro Root Solanum tuberosum cDNA, mRNA sequence.    44   4.1    1
AW929815|AW929815.1 EST354085 tomato flower buds 8 mm to pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOC5D20 5', mRNA sequence.    44   4.1    1
CZ490245|CZ490245.1 f07507-3prime Exelixis piggyBac WH insertions Drosophila melanogaster genomic Sequence recovered from 3' end of piggyBac, genomic survey sequence.    44   4.1    1
Z83239|Z83239.1 Caenorhabditis elegans Cosmid T09F5.               44   4.1    1
CL320459|CL320459.1 CH242_6P16.f CHORI-242 Sus scrofa genomic clone CH242_6P16, genomic survey sequence.    34   6.1    2
AC123803|AC123803.4 Mus musculus BAC clone RP24-492I15 from chromosome 10, complete sequence.    42   6.1    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017343_431(AE017343|pid:none) Cryptococcus neoformans var. neo...   125   8e-40
(Q92359) RecName: Full=Pumilio domain-containing protein C6G9.14...   125   2e-38
AP007151_730(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...   122   8e-37
EF068153_1(EF068153|pid:none) Hortaea werneckii pumilio-family R...   119   5e-36
CU638743_632(CU638743|pid:none) Podospora anserina genomic DNA c...   121   7e-35
CR954215_201(CR954215|pid:none) Ostreococcus tauri strain OTTH05...   119   2e-34
AJ851393_1(AJ851393|pid:none) Gallus gallus mRNA for hypothetica...   105   3e-31
CR382131_428(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...   114   4e-31
BT009970_1(BT009970|pid:none) Drosophila melanogaster RE63138 fu...   105   7e-31
A46221(A46221;S22026) abdominal segment formation protein pumili...   105   1e-30

 psg: 0.90  gvh: 0.41  alm: 0.43  top: 0.67  tms: 0.00  mit: 0.52  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for SHA672 is mit

>SHA672Z.Seq
NNNNNNNNNNCCAAAGAAGACAAATCGTCGACAAAATCGCTCCAAGTGTAGAGACCTTTG
CCTGTCATGTCTATGGTATTCATGGTATTCAAAAGCTACTTCAATACCTCTCACCCGGTC
AAGTCGAATCCATCATTGCCTCCATCAAGGGTAAGGTAATACAATTATCAAAGGATAACA
AGGGTAACTACTTGATTCAATCATTTTTGAAACAATTTTCACCAGAGGTCAATCAATTTG
TTTGTGATGCAATCATGGGTAATATTGAGGAGATTTTGTACCCATAAAGTTGGCTGTACA
GTCGTCAATCGTTGTATCGATAATGCCAATCCTGAGCAACTAGAGAAATTGGTCGATAAA
ATCACTGAACATTCCCTCAAATTGGTACAAGATCAATTTGGCAACTATGTCGTTCAACAT
CTCCTCTCAAAGAATAAAGCTTACTCTTCAAAATTGATTGTCTCACTCAAAGATAACATT
GCTGAATTATCCATCCAAAAGTTTAGCTCCAATGTCATTGAAAAGTGTTTACAATTGGCT
GATACTCCAACCTATGAATTGATCATCAAGGCTTTGACAGAAGCTGATATCCTCAGTTTG
CTTCAAGATAAATATGCCAACTTCGTGATCCAAACCGCTTTGGACGTCAGTAATGATACT
CAACACGCAAAACTTGTAAAAATTATTGTACCCTACATTCATCAAATTAAGACTCCTTAC
GTAATTCATATTCAAAAGAAGATACTTCAAGTTTACAA