>SHC166 (SHC166Q) /CSM/SH/SHC1-C/SHC166Q.Seq.d/
AATTTTTATTTTCATCAAAAACCCTGCAAATTAAAATCATTAAAAATAAAAAAAATAAAA
AATTTTATTATTTTTATTAATATTAATAATTTTCTTTTATTAATTATTATAATAGTTTTC
TTTTTTTTTTTTNANAATTTTTNATTTATAANGTTNAATAATAATAATAATAATAATAAT
AANAATAATAXXXXXXXXXX

NFYFHQKPCKLKSLKIKKIKNFIIFININNFLLLIIIIVFFFFFXNFXFIXXNNNNNNNN
XNN---

Frame A:
NFYFHQKPCKLKSLKIKKIKNFIIFININNFLLLIIIIVFFFFFXNFXFIXXNNNNNNNN
XNN---


Frame B:
ififiknpan*nh*k*kk*killflliliiffy*ll**fsfffxxifxl*xxiiiiiiii
xi---


Frame C:
flfssktlqikiiknkknkkfyyfy*y**fsfinyynsflfffxxfxiyxvx********
x*---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL473 (SHL473Q) /CSM/SH/SHL4-D/SHL473Q.Seq.d/                         82   3e-15
SHJ841 (SHJ841Q) /CSM/SH/SHJ8-B/SHJ841Q.Seq.d/                         82   3e-15
SHI782 (SHI782Q) /CSM/SH/SHI7-D/SHI782Q.Seq.d/                         82   3e-15
SHF262 (SHF262Q) /CSM/SH/SHF2-C/SHF262Q.Seq.d/                         82   3e-15
SHE303 (SHE303Q) /CSM/SH/SHE3-A/SHE303Q.Seq.d/                         82   3e-15
SHC784 (SHC784Q) /CSM/SH/SHC7-D/SHC784Q.Seq.d/                         82   3e-15
SHC433 (SHC433Q) /CSM/SH/SHC4-B/SHC433Q.Seq.d/                         82   3e-15
SHC166 (SHC166Q) /CSM/SH/SHC1-C/SHC166Q.Seq.d/                         82   3e-15
SHB605 (SHB605Q) /CSM/SH/SHB6-A/SHB605Q.Seq.d/                         82   3e-15
SHB357 (SHB357Q) /CSM/SH/SHB3-C/SHB357Q.Seq.d/                         82   3e-15

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BZ592895|BZ592895.1 SALK_047689.51.35.x Arabidopsis thaliana TDNA insertion linessurvey sequence.    44   1.0    1
AL161564|AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64.    44   1.0    1
AL049483|AL049483.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA  project).    44   1.0    1
AL049480|AL049480.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F14M19 (ESSA  project).    44   1.0    1
AC107752|AC107752.8 Mus musculus chromosome 10, clone RP23-244J13, complete sequence.    38   1.9    2
AC111534|AC111534.5 Rattus norvegicus clone CH230-155A6, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    38   2.2    2
AC148893|AC148893.4 Otolemur garnettii clone CH256-353A14, WORKING DRAFT SEQUENCE, 9 ordered pieces.    42   4.0    1
DD111102|DD111102.1 GONOCOCCAL PROTEINS AND NUCLEIC ACIDS.         42   4.0    1
AF124339|AF124339.1 Neisseria gonorrhoeae strain FA1090 transferrin-binding protein A (tbpA) gene, complete cds.    42   4.0    1
AF124338|AF124338.1 Neisseria gonorrhoeae strain UU1008 transferrin-binding protein A (tbpA) gene, complete cds.    42   4.0    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 54,822,944

 psg: 0.49  gvh: 0.49  alm: 0.15  top: 0.07  tms: 0.07  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.16  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 16.0 %: Golgi
	 16.0 %: nuclear
	 16.0 %: endoplasmic reticulum
	 12.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SHC166 is mit

>SHC166F.Seq
AATTTTTATTTTCATCAAAAACCCTGCAAATTAAAATCATTAAAAATAAAAAAAATAAAA
AATTTTATTATTTTTATTAATATTAATAATTTTCTTTTATTAATTATTATAATAGTTTTC
TTTTTTTTTTTTNANAATTTTTNATTTATAANGTTNAATAATAATAATAATAATAATAAT
AANAATAATANNNNNNNNNN