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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHD170
Library SH
(Link to library)
Clone ID SHD170
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15818-1
Original site URL
Representative seq. ID SHD170P
(Link to Original site)
Representative DNA sequence 
>SHD170 (SHD170Q) /CSM/SH/SHD1-C/SHD170Q.Seq.d/
AAATTATTATTATAAAAATATTAATAATTTTTTATTTAAAATCTATTATTTTTTTTTAAC
CATGGTCCATCAGGCACAACATCACTACTACCAACAACAACAACAACAACAAACACAACA
ACAACTAAAAATATTAAATAAAAAAATCAAAGAGAATATAAGTGGGAAAAATAAAAATAA
GAATTTAGATAATAATAATAATAATAATAATATTAATAATACAACCACAACTACAAGTAA
TAATAATAATAGTAATAAAAATACATCGAATAGTAAAAATAGTCATTTAAGTGAAAAGAG
TAGTAATAGTAATAGTATTCCACAAATTCAATCTCAAGATAGCAGAATATTTAATACATT
TACAAAAAATCATTTAAATAATTTAATAAATAATCAACACAATAATAATTGCTATAATAA
TATAACAGCAGGTCATTATCAACAACAACAACAACAACAACCACCTCATCATCATCCAGT
TTCAATAATTAAAAAAGAATCGTCATTATCATCATTACCAGTATCATCGAATACAGGAGG
GGGAGGATTTGAATCAACAAATAACAATAATAATAATAATAATXXXXXXXXXXCTACTAC
TACTACTACAACTACAACTACTAAATCAAATAATCAAAGAATGTATAAAACAATTCGTAT
GAAAAAGAATGGTGGTATGAAAATGGGTGGTGATATAATGTTAAATTATATGGGTGGTAA
TAATGGTAATAATAATGATAGATTAGCAGCAACAATGACAACAACAACAACAACAACACC
AGAGAGTTCTTTAGAATTATTACCAAATACAACAGAGCAAGCATCATCAACAAATTCATT
AACTGCAATGAATATTCAAACAAATGCACATTCAACTCATGGTAATACTTTTGGTGCATC
ATTTAATCGTTCAACAAGTAGTCAAGATATTATTGTTAGTGGTACTGCAACCACTTCAAA
ATCATCAATGGCAAAATTGGGTGCAAACTTTTTCCTTACACCTGATCAACAACATGCTTT
AGCTTCAACTTCAAATTTATCATCATCAACTAATAATAACTCTGCCACTGCTACTACCAC
TGCTACTACCACCACCACCACCACTGGTGGTAATAAAGATAATATTAATGATATTATGCA
ATTCCCATCAACACCTGTATATCTTACAAATTCACCAAAAACATTGGAAAGAAAGAATAC
AAGTTCAAAATCATTAACTAAAATCGATAAAGAAAATAAAGAACGTGAAAAGAGATTAGA
GAAAGAAAAGAAAGAAAGACTAAAAAGAAGAAAAATATTTAAAGAAATTAGAAAAAATGA
AAAAGCGAACAAGAGAAAAAAGCGNATCAGAAAAGAAATAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
NYYYKNINNFLFKIYYFFLTMVHQAQHHYYQQQQQQQTQQQLKILNKKIKENISGKNKNK
NLDNNNNNNNINNTTTTTSNNNNSNKNTSNSKNSHLSEKSSNSNSIPQIQSQDSRIFNTF
TKNHLNNLINNQHNNNCYNNITAGHYQQQQQQQPPHHHPVSIIKKESSLSSLPVSSNTGG
GGFESTNNNNNNNN---

---TTTTTTTTTKSNNQRMYKTIRMKKNGGMKMGGDIMLNYMGGNNGNNNDRLAATMTTT
TTTTPESSLELLPNTTEQASSTNSLTAMNIQTNAHSTHGNTFGASFNRSTSSQDIIVSGT
ATTSKSSMAKLGANFFLTPDQQHALASTSNLSSSTNNNSATATTTATTTTTTTGGNKDNI
NDIMQFPSTPVYLTNSPKTLERKNTSSKSLTKIDKENKEREKRLEKEKKERLKRRKIFKE
IRKNEKANKRKKRIRKEIK
Translated Amino Acid sequence (All Frames) 
Frame A:
klll*ky**ffi*nllfffnhgpsgttsllpttttttnttttknik*knqreykwek*k*
efr*******y**ynhnyk*******kyie**k*sfk*ke*****ystnsisr*qni*yi
ykksfk*fnk*stq**ll**ynsrslsttttttttsssssfnn*kriviiiitsiieyrr
gri*ink*q*****---

---lllllqlqllnqiikecikqfv*krmvv*kwvvi*c*iiwvvimviimid*qqq*qq
qqqqhqrvl*nyyqiqqskhhqqih*lq*ifkqmhiqlmvillvhhlivqqvvkilllvv
lqplqnhqwqnwvqtfslhlinnml*lqlqiyhhqliitlplllplllppppplvvikii
lmilcnshqhlyilqihqkhwkeriqvqnh*lksikkiknvkrd*rkkrkkd*keekylk
klekmkkrtreksxsekk*

Frame B:
NYYYKNINNFLFKIYYFFLTMVHQAQHHYYQQQQQQQTQQQLKILNKKIKENISGKNKNK
NLDNNNNNNNINNTTTTTSNNNNSNKNTSNSKNSHLSEKSSNSNSIPQIQSQDSRIFNTF
TKNHLNNLINNQHNNNCYNNITAGHYQQQQQQQPPHHHPVSIIKKESSLSSLPVSSNTGG
GGFESTNNNNNNNN---

---yyyyynyny*ik*sknv*nnsyekewwyengw*ynvklygw**w*****issnndnn
nnnntreffriitkynrasiinkfincneysnkctfnsw*yfwcii*sfnk*sryyc*wy
cnhfkiingkigcklfpyt*sttcfsfnfkfiiin***lchcyyhcyyhhhhhww**r*y
**yyaipintcisykftknigkkeykfkiin*nr*rk*rt*keirerkerktkkkkni*r
n*kk*kseqekkaxqkrnk

Frame C:
iiiikiliifylksiiff*pwsirhnitttnnnnnnkhnnn*ky*ikkskri*vgkikir
i*iiiiiiiiliiqpqlqviiiivikihrivkivi*vkrvvivivfhkfnlkiaeylihl
qkii*ii**iintiiiaiii*qqviinnnnnnnhliiiqfq*lkknrhyhhyqyhriqeg
edlnqqitiiiii---

---TTTTTTTTTKSNNQRMYKTIRMKKNGGMKMGGDIMLNYMGGNNGNNNDRLAATMTTT
TTTTPESSLELLPNTTEQASSTNSLTAMNIQTNAHSTHGNTFGASFNRSTSSQDIIVSGT
ATTSKSSMAKLGANFFLTPDQQHALASTSNLSSSTNNNSATATTTATTTTTTTGGNKDNI
NDIMQFPSTPVYLTNSPKTLERKNTSSKSLTKIDKENKEREKRLEKEKKERLKRRKIFKE
IRKNEKANKRKKRIRKEIK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC426 (VHC426Q) /CSM/VH/VHC4-B/VHC426Q.Seq.d/                        613   e-174
SHL335 (SHL335Q) /CSM/SH/SHL3-B/SHL335Q.Seq.d/                        613   e-174
SHJ804 (SHJ804Q) /CSM/SH/SHJ8-A/SHJ804Q.Seq.d/                        613   e-174
SHE742 (SHE742Q) /CSM/SH/SHE7-B/SHE742Q.Seq.d/                        613   e-174
SHD170 (SHD170Q) /CSM/SH/SHD1-C/SHD170Q.Seq.d/                        613   e-174
SFE464 (SFE464Q) /CSM/SF/SFE4-C/SFE464Q.Seq.d/                        613   e-174
FC-BS13 (FC-BS13Q) /CSM/FC/FC-BS/FC-BS13Q.Seq.d/                      613   e-174
CHM359 (CHM359Q) /CSM/CH/CHM3-C/CHM359Q.Seq.d/                        613   e-174
CHL542 (CHL542Q) /CSM/CH/CHL5-B/CHL542Q.Seq.d/                        613   e-174
CHG184 (CHG184Q) /CSM/CH/CHG1-D/CHG184Q.Seq.d/                        613   e-174
own update 2002.10.16
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           46   3e-05  12
AF238312|AF238312.1 Dictyostelium discoideum putative serine-threonine protein kinase MkcB (mkcB) gene, complete cds.    56   8e-04  3
BX908798|BX908798.1 Parachlamydia-related symbiont UWE25, complete genome.    40   0.001  2
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36   0.001  15
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   0.002  13
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            44   0.002  13
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    34   0.002  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   0.005  14
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   0.005  14
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   0.008  14
dna update 2006. 1.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF177464_1(AF177464|pid:none) Drosophila melanogaster Tob homolo...    35   4.5
BT010303_1(BT010303|pid:none) Drosophila melanogaster LD04013 fu...    35   4.5
protein update 2008.11.14
PSORT 

 psg: 0.65  gvh: 0.40  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.31  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SHD170 is nuc
5' end seq. ID SHD170F
5' end seq. 
>SHD170F.Seq
AAATTATTATTATAAAAATATTAATAATTTTTTATTTAAAATCTATTATTTTTTTTTAAC
CATGGTCCATCAGGCACAACATCACTACTACCAACAACAACAACAACAACAAACACAACA
ACAACTAAAAATATTAAATAAAAAAATCAAAGAGAATATAAGTGGGAAAAATAAAAATAA
GAATTTAGATAATAATAATAATAATAATAATATTAATAATACAACCACAACTACAAGTAA
TAATAATAATAGTAATAAAAATACATCGAATAGTAAAAATAGTCATTTAAGTGAAAAGAG
TAGTAATAGTAATAGTATTCCACAAATTCAATCTCAAGATAGCAGAATATTTAATACATT
TACAAAAAATCATTTAAATAATTTAATAAATAATCAACACAATAATAATTGCTATAATAA
TATAACAGCAGGTCATTATCAACAACAACAACAACAACAACCACCTCATCATCATCCAGT
TTCAATAATTAAAAAAGAATCGTCATTATCATCATTACCAGTATCATCGAATACAGGAGG
GGGAGGATTTGAATCAACAAATAACAATAATAATAATAATAATNNNNNNNNNN
Length of 5' end seq. 593
3' end seq. ID SHD170Z
3' end seq. 
>SHD170Z.Seq
NNNNNNNNNNCTACTACTACTACTACAACTACAACTACTAAATCAAATAATCAAAGAATG
TATAAAACAATTCGTATGAAAAAGAATGGTGGTATGAAAATGGGTGGTGATATAATGTTA
AATTATATGGGTGGTAATAATGGTAATAATAATGATAGATTAGCAGCAACAATGACAACA
ACAACAACAACAACACCAGAGAGTTCTTTAGAATTATTACCAAATACAACAGAGCAAGCA
TCATCAACAAATTCATTAACTGCAATGAATATTCAAACAAATGCACATTCAACTCATGGT
AATACTTTTGGTGCATCATTTAATCGTTCAACAAGTAGTCAAGATATTATTGTTAGTGGT
ACTGCAACCACTTCAAAATCATCAATGGCAAAATTGGGTGCAAACTTTTTCCTTACACCT
GATCAACAACATGCTTTAGCTTCAACTTCAAATTTATCATCATCAACTAATAATAACTCT
GCCACTGCTACTACCACTGCTACTACCACCACCACCACCACTGGTGGTAATAAAGATAAT
ATTAATGATATTATGCAATTCCCATCAACACCTGTATATCTTACAAATTCACCAAAAACA
TTGGAAAGAAAGAATACAAGTTCAAAATCATTAACTAAAATCGATAAAGAAAATAAAGAA
CGTGAAAAGAGATTAGAGAAAGAAAAGAAAGAAAGACTAAAAAGAAGAAAAATATTTAAA
GAAATTAGAAAAAATGAAAAAGCGAACAAGAGAAAAAAGCGNATCAGAAAAGAAATAAAA
Length of 3' end seq. 780
Connected seq. ID SHD170P
Connected seq. 
>SHD170P.Seq
AAATTATTATTATAAAAATATTAATAATTTTTTATTTAAAATCTATTATTTTTTTTTAAC
CATGGTCCATCAGGCACAACATCACTACTACCAACAACAACAACAACAACAAACACAACA
ACAACTAAAAATATTAAATAAAAAAATCAAAGAGAATATAAGTGGGAAAAATAAAAATAA
GAATTTAGATAATAATAATAATAATAATAATATTAATAATACAACCACAACTACAAGTAA
TAATAATAATAGTAATAAAAATACATCGAATAGTAAAAATAGTCATTTAAGTGAAAAGAG
TAGTAATAGTAATAGTATTCCACAAATTCAATCTCAAGATAGCAGAATATTTAATACATT
TACAAAAAATCATTTAAATAATTTAATAAATAATCAACACAATAATAATTGCTATAATAA
TATAACAGCAGGTCATTATCAACAACAACAACAACAACAACCACCTCATCATCATCCAGT
TTCAATAATTAAAAAAGAATCGTCATTATCATCATTACCAGTATCATCGAATACAGGAGG
GGGAGGATTTGAATCAACAAATAACAATAATAATAATAATAAT----------CTACTAC
TACTACTACAACTACAACTACTAAATCAAATAATCAAAGAATGTATAAAACAATTCGTAT
GAAAAAGAATGGTGGTATGAAAATGGGTGGTGATATAATGTTAAATTATATGGGTGGTAA
TAATGGTAATAATAATGATAGATTAGCAGCAACAATGACAACAACAACAACAACAACACC
AGAGAGTTCTTTAGAATTATTACCAAATACAACAGAGCAAGCATCATCAACAAATTCATT
AACTGCAATGAATATTCAAACAAATGCACATTCAACTCATGGTAATACTTTTGGTGCATC
ATTTAATCGTTCAACAAGTAGTCAAGATATTATTGTTAGTGGTACTGCAACCACTTCAAA
ATCATCAATGGCAAAATTGGGTGCAAACTTTTTCCTTACACCTGATCAACAACATGCTTT
AGCTTCAACTTCAAATTTATCATCATCAACTAATAATAACTCTGCCACTGCTACTACCAC
TGCTACTACCACCACCACCACCACTGGTGGTAATAAAGATAATATTAATGATATTATGCA
ATTCCCATCAACACCTGTATATCTTACAAATTCACCAAAAACATTGGAAAGAAAGAATAC
AAGTTCAAAATCATTAACTAAAATCGATAAAGAAAATAAAGAACGTGAAAAGAGATTAGA
GAAAGAAAAGAAAGAAAGACTAAAAAGAAGAAAAATATTTAAAGAAATTAGAAAAAATGA
AAAAGCGAACAAGAGAAAAAAGCGNATCAGAAAAGAAATAAAA
Length of connected seq. 1353
Full length Seq ID -
Full length Seq. -
Length of full length seq. -