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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHD585
Library SH
(Link to library)
Clone ID SHD585
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHD585P
(Link to Original site)
Representative DNA sequence 
>SHD585 (SHD585Q) /CSM/SH/SHD5-D/SHD585Q.Seq.d/
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACCAAXXXXXXXXXXTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTG
GTCAATTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTG
AAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTA
CCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATT
TAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTAT
CACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTT
TAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTA
TTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAA
AGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTG
GTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCC
TTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAAGAAAAAGATCATCATCTCAA
CTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACA
AAAAACTA
sequence update 2002.10.25
Translated Amino Acid sequence 
**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKT
NTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAK
QPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA
T---

---LIGAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDG
QGRTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNR
LDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRP
LKRYIEKNIVTELSKLILGGKLKENQGVVVKKKIIISTLIL*i*nnnnnvqllqpknkkl
Translated Amino Acid sequence (All Frames) 
Frame A:
ink**lkfayikeikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliqknllik
qiqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvlkdy*p
nnlfkiqyhlkflqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyqywemlv
qp---

---LIGAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDG
QGRTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNR
LDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRP
LKRYIEKNIVTELSKLILGGKLKENQGVVVKKKIIISTLIL*i*nnnnnvqllqpknkkl

Frame B:
linnn*nlhi*kk*kffifckhiifck*ii*ffnihiyiyifkik*nknvi*srriy**n
kynfvknsrigkrkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf*kiisq
ttcsksstt*nfskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiisigrcwc
nq---

---*lvlhqvm*vmikvvn*lkpseedhtv*yclmklkklinkfgmfsykywmkvvlpmv
kvep*isqmllsl*pqi*vvntslvnkqtkkvvttlyhklvkikslmklenisvqsf*iv
smi*lsllh*vkktfivlllfn*dpskrd*kikicl*rfqtml*iqlsmlhmiqslvvdh
*nvtlkrilslnlvnsslvvn*kkikvllsrkrsssql*yyrfktttttssfsnqktkn

Frame C:
**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKT
NTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAK
QPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA
T---

---nwcstrlcrl*srwsin*srqkktiqcsiv**s*kssstslecsltsig*rssyrws
r*nrrflkccyhydlkfr*sihpw*tskqrrw*qlfitsl*r*sh**s*ktfpsrvfkss
r*ynclysie*rkps*yyyssikirrkeirrskyvfkdfkrcfrfnyqcci*snlww*ti
etlh*keych*t**thpww*ikrksrcccqekdhhlnfdiidlkqqqqrpasptkkqkt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHD585 (SHD585Q) /CSM/SH/SHD5-D/SHD585Q.Seq.d/                       2131   0.0
SHL735 (SHL735Q) /CSM/SH/SHL7-B/SHL735Q.Seq.d/                       1378   0.0
SHK740 (SHK740Q) /CSM/SH/SHK7-B/SHK740Q.Seq.d/                       1378   0.0
SHK581 (SHK581Q) /CSM/SH/SHK5-D/SHK581Q.Seq.d/                       1378   0.0
SHJ671 (SHJ671Q) /CSM/SH/SHJ6-C/SHJ671Q.Seq.d/                       1378   0.0
SHG894 (SHG894Q) /CSM/SH/SHG8-D/SHG894Q.Seq.d/                       1378   0.0
SHG564 (SHG564Q) /CSM/SH/SHG5-C/SHG564Q.Seq.d/                       1378   0.0
SHG363 (SHG363Q) /CSM/SH/SHG3-C/SHG363Q.Seq.d/                       1378   0.0
SHG334 (SHG334Q) /CSM/SH/SHG3-B/SHG334Q.Seq.d/                       1378   0.0
SHD390 (SHD390Q) /CSM/SH/SHD3-D/SHD390Q.Seq.d/                       1378   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome.    78   5e-19  3
AE016746|AE016746.1 Staphylococcus epidermidis ATCC 12228, section 3 of 9 of the complete genome.    78   5e-19  3
AX145048|AX145048.1 Sequence 3770 from Patent WO0134809.           78   6e-19  3
AR485684|AR485684.1 Sequence 3770 from patent US 6703492.          78   6e-19  3
AF269730|AF269730.1 Staphylococcus epidermidis strain SR1 clone step.1020d12 genomic sequence.    78   6e-19  3
AX143829|AX143829.1 Sequence 2551 from Patent WO0134809.           78   6e-19  3
AR484857|AR484857.1 Sequence 2551 from patent US 6703492.          78   6e-19  3
CP000033|CP000033.1 Lactobacillus acidophilus NCFM, complete genome.    60   7e-14  3
BQ862449|BQ862449.1 QGC21B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC21B24, mRNA sequence.    80   1e-12  2
AL399818|AL399818.1 T7 end of clone AS0AA017F07 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    58   1e-12  4
dna update 2006. 2. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par...   247   5e-64
AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ...   247   7e-64
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote...   246   1e-63
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par...   245   3e-63
AF083327_1(AF083327|pid:none) Zea mays 101 kDa heat shock protei...   244   3e-63
BT066296_1(BT066296|pid:none) Zea mays full-length cDNA clone ZM...   244   3e-63
(Q6F2Y7) RecName: Full=Heat shock protein 101;  &AC130611_3(AC13...   244   3e-63
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par...   244   4e-63
L35272_1(L35272|pid:none) Glycine max heat shock protein (SB100)...   244   6e-63
AF174433_1(AF174433|pid:none) Triticum aestivum heat shock prote...   243   8e-63
protein update 2009. 4.16
PSORT 

 psg: 0.63  gvh: 0.36  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar

>> prediction for SHD585 is cyt
5' end seq. ID SHD585F
5' end seq. 
>SHD585F.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACCAANNNNNNNNNN
Length of 5' end seq. 557
3' end seq. ID SHD585Z
3' end seq. 
>SHD585Z.Seq
NNNNNNNNNNTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGTCAATT
AACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGC
TCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGG
TCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAG
TCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGC
TTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCG
TCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTAC
TCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTC
AAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACC
ATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGG
TAAATTAAAAGAAAATCAAGGTGTTGTTGTCAAGAAAAAGATCATCATCTCAACTTTGAT
ATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACT
A
Length of 3' end seq. 721
Connected seq. ID SHD585P
Connected seq. 
>SHD585P.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACCAA----------TTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTG
GTCAATTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTG
AAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTA
CCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATT
TAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTAT
CACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTT
TAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTA
TTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAA
AGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTG
GTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCC
TTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAAGAAAAAGATCATCATCTCAA
CTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACA
AAAAACTA
Length of connected seq. 1258
Full length Seq ID -
Full length Seq. -
Length of full length seq. -