>SHD865 (SHD865Q) /CSM/SH/SHD8-C/SHD865Q.Seq.d/
XXXXXXXXXXGTACAAGTAATATGAAATTCAGTATGAATGGTGGTCTTATCATTGGTACT
TTGGATGGTGCAAACATTGAAATTCGTGATGCCATTGGTCATGAAAATATGTACATCTTT
GGTGCTCGTTCTGAAGAGGTCAACAAAGTAAAGAAAATTATTCATGATGGAAAATTCACA
CCAGACACTAGATGGGCTCGTGTTTTAACCGCTATTAAAGAAGATACTTTTGGTCCACAT
GAACAATTCCAAGATATTATCAACTCTGTTAGTGGTGGCAATGATCATTACATTCTTAGT
TATGATTTTGGTTCTTACTTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGA
GCTAAATGGGCTAAAAAATCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGAT
AGAACCATTAAAGAGTATGCTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGT
CCAGTTCCAGTTTCAAATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCA
CCAAATGATATCAATGCTATCTCAATTGAAAGATTATCACCTTTAACTTANNTGCTCCTC
AGT

---TSNMKFSMNGGLIIGTLDGANIEIRDAIGHENMYIFGARSEEVNKVKKIIHDGKFTP
DTRWARVLTAIKEDTFGPHEQFQDIINSVSGGNDHYILSYDFGSYLDIQNSIDQDFKDRA
KWAKKSIMASVCCGKFSSDRTIKEYAQQIWGIEEWKRPGPVPVSNEEARSLLVPPPSGSP
NDINAISIERLSPLTXXLLS

Frame A:
---yk*yeiqyewwsyhwyfgwckh*ns*chws*kyvhlwcsf*rgqqskenys*wkiht
rh*mgscfnry*rryfwst*tipryyqlc*wwq*slhs*l*fwfllgyskfn*srfqr*s
*mg*kinygfsllw*iqfr*nh*rvcstnlgy*rmeetrssssfk*rssffissttiwft
k*yqcyln*kiitfnlxapq


Frame B:
---TSNMKFSMNGGLIIGTLDGANIEIRDAIGHENMYIFGARSEEVNKVKKIIHDGKFTP
DTRWARVLTAIKEDTFGPHEQFQDIINSVSGGNDHYILSYDFGSYLDIQNSIDQDFKDRA
KWAKKSIMASVCCGKFSSDRTIKEYAQQIWGIEEWKRPGPVPVSNEEARSLLVPPPSGSP
NDINAISIERLSPLTXXLLS


Frame C:
---qvi*nsv*mvvlslvlwmvqtlkfvmplvmkictslvlvlkrstk*rklfmmenshq
tldglvf*pllkkillvhmnnskilstllvvamiitflvmilvltwifkiqlikiskiel
nglknqlwlqfvvvnsvqieplksmlnkfgvlkngrdqvqfqfqmkklvly*fhhhlvhq
mismlsqlkdyhl*lxcss

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHD865 (SHD865Q) /CSM/SH/SHD8-C/SHD865Q.Seq.d/                       1164   0.0
CHM122 (CHM122Q) /CSM/CH/CHM1-A/CHM122Q.Seq.d/                       1162   0.0
SHL889 (SHL889Q) /CSM/SH/SHL8-D/SHL889Q.Seq.d/                       1148   0.0
SHL711 (SHL711Q) /CSM/SH/SHL7-A/SHL711Q.Seq.d/                       1148   0.0
SHL702 (SHL702Q) /CSM/SH/SHL7-A/SHL702Q.Seq.d/                       1148   0.0
SHL483 (SHL483Q) /CSM/SH/SHL4-D/SHL483Q.Seq.d/                       1148   0.0
SHL445 (SHL445Q) /CSM/SH/SHL4-B/SHL445Q.Seq.d/                       1148   0.0
SHL406 (SHL406Q) /CSM/SH/SHL4-A/SHL406Q.Seq.d/                       1148   0.0
SHL246 (SHL246Q) /CSM/SH/SHL2-B/SHL246Q.Seq.d/                       1148   0.0
SHL184 (SHL184Q) /CSM/SH/SHL1-D/SHL184Q.Seq.d/                       1148   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds.  1148   0.0    1
X62142|X62142.1 D. discoideum glpV gene for glycogen phosphorylase 1.    82   4e-14  3
BX538351|BX538351.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4.    50   5e-05  2
AF542095|AF542095.1 Entamoeba histolytica glycogen phosphorylase-2 mRNA, partial cds.    60   6e-05  1
DT593524|DT593524.1 wmi03-8ms2-h10 Wmi03 Welwitschia mirabilis cDNA clone wmi03-8ms2-h10 5', mRNA sequence.    58   2e-04  1
BI187719|BI187719.1 b2a02fs.r1 Fusarium sporotrichioides Tri 10 overexpressed cDNA library Fusarium sporotrichioides cDNA clone b2a02fs 5', mRNA sequence.    58   2e-04  1
AY635994|AY635994.1 Monacrosporium haptotylum glycogen phosphorylase-like protein (Gph1) mRNA, complete cds.    58   2e-04  1
CX648605|CX648605.1 COLD1_29_F01.g1_A029 Root cold Pinus taeda cDNA clone COLD1_29_F01_A029 5', mRNA sequence.    50   0.056  1
CX648527|CX648527.1 COLD1_29_F01.b1_A029 Root cold Pinus taeda cDNA clone COLD1_29_F01_A029 3', mRNA sequence.    50   0.056  1
CB210834|CB210834.1 OML01114 Oryza minuta HybriZAP-2.1 XR library Oryza minuta cDNA 5', mRNA sequence.    50   0.056  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY098895_1(AY098895|pid:none) Citrus hybrid cultivar starch phos...   156   5e-37
EU165056_1(EU165056|pid:none) Cyanophora paradoxa starch phospho...   154   2e-36
(Q9SD76) RecName: Full=Alpha-glucan phosphorylase, H isozyme;   ...   151   1e-35
AK103367_1(AK103367|pid:none) Oryza sativa Japonica Group cDNA c...   150   3e-35
AF326977_1(AF326977|pid:none) Oryza sativa alpha 1,4-glucan phos...   150   3e-35
EF576564_1(EF576564|pid:none) Oryza sativa (indica cultivar-grou...   150   3e-35
(P32811) RecName: Full=Alpha-glucan phosphorylase, H isozyme;   ...   149   6e-35
EU857639_1(EU857639|pid:none) Zea mays starch phosphorylase 2 pr...   148   1e-34
(Q9LKJ3) RecName: Full=Alpha-glucan phosphorylase, H isozyme;   ...   148   1e-34
AB435244_1(AB435244|pid:none) Cucurbita maxima CmPhoH1 mRNA for ...   148   1e-34

 psg: 0.92  gvh: 0.38  alm: 0.47  top: 0.23  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SHD865 is cyt

>SHD865Z.Seq
NNNNNNNNNNGTACAAGTAATATGAAATTCAGTATGAATGGTGGTCTTATCATTGGTACT
TTGGATGGTGCAAACATTGAAATTCGTGATGCCATTGGTCATGAAAATATGTACATCTTT
GGTGCTCGTTCTGAAGAGGTCAACAAAGTAAAGAAAATTATTCATGATGGAAAATTCACA
CCAGACACTAGATGGGCTCGTGTTTTAACCGCTATTAAAGAAGATACTTTTGGTCCACAT
GAACAATTCCAAGATATTATCAACTCTGTTAGTGGTGGCAATGATCATTACATTCTTAGT
TATGATTTTGGTTCTTACTTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGA
GCTAAATGGGCTAAAAAATCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGAT
AGAACCATTAAAGAGTATGCTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGT
CCAGTTCCAGTTTCAAATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCA
CCAAATGATATCAATGCTATCTCAATTGAAAGATTATCACCTTTAACTTANNTGCTCCTC
AGT