>SHE559 (SHE559Q) /CSM/SH/SHE5-C/SHE559Q.Seq.d/
XXXXXXXXXXCCTGGTATTTTATCAACAATTGTATTTTCAAATGAATCACAATCAAAATA
TTATGTTACCTCTGGTACACATCATAAAATTAAATTGGTAACATCAAAATATTCAATTGA
ATCGTTTAATCCAAATAATCTACTTTTCTCCTATGATCCTCCAATAGTAAATACAACAAC
CACCGTTAGTGAAGAAGGTGGTTTAATTCATCTAACTGGTACAAGTTTTAATAATGTTGG
TTTATTCGTAACAGTTGGTAATGTAACTTGTGAAAATCCATACTCTGATACATTTGATTC
TGTATCATGTTATATCCCACCATTTACTCCAATACTCTCTGATAATAGTACTCAATGGGT
TAATATTACTGTTGATGGTCAAACAAATTCATTTTTTATCTTTAATTATAATTTCACCAA
AGCAATTAGTTTTGAAGTTGAAAAAGATAGTATGTCAAGTTATTATAAATGGTTGATACC
GGTAGTAATAATTGGTGTATTAGTTATTGTATTAGCAGTAGTTTATTCTGTATATATGTT
TAAGAAATTCCAAAGATTAAAAAAGATAAAAGAAATGATGAATCCAAAACCCCCAACAAA
TCAACCACAAAATAATGCTNACTGNTCNTCAG

---GILSTIVFSNESQSKYYVTSGTHHKIKLVTSKYSIESFNPNNLLFSYDPPIVNTTTT
VSEEGGLIHLTGTSFNNVGLFVTVGNVTCENPYSDTFDSVSCYIPPFTPILSDNSTQWVN
ITVDGQTNSFFIFNYNFTKAISFEVEKDSMSSYYKWLIPVVIIGVLVIVLAVVYSVYMFK
KFQRLKKIKEMMNPKPPTNQPQNNAXXSS

Frame A:
---lvfyqqlyfqmnhnqnimlplvhiiklnw*hqniqlnrliqiiyfspmilq**iqqp
plvkkvv*fi*lvqvlimlvys*qlvm*lvkihtlihlilyhvishhllqysliivlngl
illlmvkqihflsliiispkqlvlklkkivcqviing*yr***lvy*lly*q*filyicl
rnskd*kr*kk**iqnpqqinhkimltxxq


Frame B:
---wyfinncifk*itikilcylwyts*n*ignikifn*iv*sk*stfll*ssnskynnh
r**rrwfnssnwykf**cwfirnsw*cnl*ksil*yi*fcimlyptiysntl***ysmg*
yyc*wsnkfifyl*l*fhqsn*f*s*kr*yvkll*mvdtgsnnwcisycissslfciyv*
eipkikkdkrndesktpnksttk*cxlxx


Frame C:
---GILSTIVFSNESQSKYYVTSGTHHKIKLVTSKYSIESFNPNNLLFSYDPPIVNTTTT
VSEEGGLIHLTGTSFNNVGLFVTVGNVTCENPYSDTFDSVSCYIPPFTPILSDNSTQWVN
ITVDGQTNSFFIFNYNFTKAISFEVEKDSMSSYYKWLIPVVIIGVLVIVLAVVYSVYMFK
KFQRLKKIKEMMNPKPPTNQPQNNAXXSS

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHE559 (SHE559Q) /CSM/SH/SHE5-C/SHE559Q.Seq.d/                       1215   0.0
CHI219 (CHI219Q) /CSM/CH/CHI2-A/CHI219Q.Seq.d/                       1205   0.0
SFJ454 (SFJ454Q) /CSM/SF/SFJ4-C/SFJ454Q.Seq.d/                       1039   0.0
SHA776 (SHA776Q) /CSM/SH/SHA7-D/SHA776Q.Seq.d/                        997   0.0
CHG567 (CHG567Q) /CSM/CH/CHG5-C/CHG567Q.Seq.d/                        969   0.0
CHR582 (CHR582Q) /CSM/CH/CHR5-D/CHR582Q.Seq.d/                        961   0.0
CHO436 (CHO436Q) /CSM/CH/CHO4-B/CHO436Q.Seq.d/                        916   0.0
CHJ893 (CHJ893Q) /CSM/CH/CHJ8-D/CHJ893Q.Seq.d/                        866   0.0
CHJ544 (CHJ544Q) /CSM/CH/CHJ5-B/CHJ544Q.Seq.d/                        839   0.0
CHJ172 (CHJ172Q) /CSM/CH/CHJ1-C/CHJ172Q.Seq.d/                        785   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DN790913|DN790913.1 90174318 Sea Urchin primary mesenchyme cell cDNA librarysequence.    52   0.015  1
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     36   0.099  10
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             36   0.099  10
BA000003|BA000003.2 Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence.    36   0.099  10
AF402141|AF402141.1 Schizophyllum commune mitochondrial DNA, complete genome.    32   0.17   5
CZ976561|CZ976561.1 178463 Tomato MboI BAC Library Lycopersicon esculentum genomic clone SL_MboI0066L20 3, genomic survey sequence.    48   0.23   1
CT181502|CT181502.1 Sus scrofa genomic clone PigE-138M21, genomic survey sequence.    48   0.23   1
AY232270|AY232270.1 Dictyostelium discoideum putative protein Roco8 (roco8) gene, partial cds.    38   0.30   4
AP008164|AP008164.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 4, clone:LjT21C10, TM1581.    44   0.41   3
CL157070|CL157070.1 104_344_10783293_116_31374_237 Sorghum methylation-filtered library (LibID: 104) Sorghum bicolor genomic clone 10783293, genomic survey sequence.    36   0.46   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso...    52   1e-05
AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom...    48   3e-04
AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromoso...    42   0.018
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso...    40   0.041
AY569307_10(AY569307|pid:none) Sulfolobus turreted icosahedral v...    36   1.0
AC116305_65(AC116305|pid:none) Dictyostelium discoideum chromoso...    35   2.2
AB110101_1(AB110101|pid:none) Saccharomyces cerevisiae K701-AWA1...    34   2.9
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso...    34   2.9
CP001032_2864(CP001032|pid:none) Opitutus terrae PB90-1, complet...    33   6.5
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...    33   8.5

 psg: 0.75  gvh: 0.62  alm: 0.06  top: 0.93  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SHE559 is nuc

>SHE559Z.Seq
NNNNNNNNNNCCTGGTATTTTATCAACAATTGTATTTTCAAATGAATCACAATCAAAATA
TTATGTTACCTCTGGTACACATCATAAAATTAAATTGGTAACATCAAAATATTCAATTGA
ATCGTTTAATCCAAATAATCTACTTTTCTCCTATGATCCTCCAATAGTAAATACAACAAC
CACCGTTAGTGAAGAAGGTGGTTTAATTCATCTAACTGGTACAAGTTTTAATAATGTTGG
TTTATTCGTAACAGTTGGTAATGTAACTTGTGAAAATCCATACTCTGATACATTTGATTC
TGTATCATGTTATATCCCACCATTTACTCCAATACTCTCTGATAATAGTACTCAATGGGT
TAATATTACTGTTGATGGTCAAACAAATTCATTTTTTATCTTTAATTATAATTTCACCAA
AGCAATTAGTTTTGAAGTTGAAAAAGATAGTATGTCAAGTTATTATAAATGGTTGATACC
GGTAGTAATAATTGGTGTATTAGTTATTGTATTAGCAGTAGTTTATTCTGTATATATGTT
TAAGAAATTCCAAAGATTAAAAAAGATAAAAGAAATGATGAATCCAAAACCCCCAACAAA
TCAACCACAAAATAATGCTNACTGNTCNTCAG