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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFJ328
Library AF
(Link to library)
Clone ID AFJ328
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16268-1
Original site URL
Representative seq. ID AFJ328F
(Link to Original site)
Representative DNA sequence 
>AFJ328 (AFJ328Q) /CSM/AF/AFJ3-B/AFJ328Q.Seq.d/
GTATTATATTCTCTCTTTATTTCTTTTCTATATATAGATAAATTTTTTTTAGAAAAACTA
AAAAAAAACCTCAAACAATTAATACAAAANGGTAAACATNGGNGGAACTCAAGAAAAATG
TACTGCATGTGCTAAAACTGTATACTTAACAGANAAGATTGTAGTTGAAGATAAAGAAGA
TAAGAAAACTTTCCACAAATTATGTTTAANNCGNACTCACTGTAAGCTTACATTAAGNCT
TGGTAACTATGCATCATTAAATGGNGTATTCTATTGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
yyilslflfyi*inff*kn*kktsnn*YKXVNXGGTQEKCTACAKTVYLTXKIVVEDKED
KKTFHKLCLXRTHCKLTLXLGNYASLNGVFY---
Translated Amino Acid sequence (All Frames) 
Frame A:
vlyslfisflyidkffleklkknlkqliqxgkhxxnsrkmycmc*ncilnrxdcs*r*rr
*enfpqimfxxxsl*ayikxw*lciikwxil---


Frame B:
yyilslflfyi*inff*kn*kktsnn*YKXVNXGGTQEKCTACAKTVYLTXKIVVEDKED
KKTFHKLCLXRTHCKLTLXLGNYASLNGVFY---


Frame C:
iifslyffsiyr*iffrktkkkpqtintkx*txxelkknvlhvlklyt*qxrl*lkikki
rklstnyv*xxltvslh*xlvtmhh*mxysi---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFJ328 (AFJ328Q) /CSM/AF/AFJ3-B/AFJ328Q.Seq.d/                        392   e-108
CHA595 (CHA595Q) /CSM/CH/CHA5-D/CHA595Q.Seq.d/                        385   e-106
VFK172 (VFK172Q) /CSM/VF/VFK1-C/VFK172Q.Seq.d/                        351   4e-96
VFJ444 (VFJ444Q) /CSM/VF/VFJ4-B/VFJ444Q.Seq.d/                        351   4e-96
VFG695 (VFG695Q) /CSM/VF/VFG6-D/VFG695Q.Seq.d/                        351   4e-96
SSM637 (SSM637Q) /CSM/SS/SSM6-B/SSM637Q.Seq.d/                        351   4e-96
SFL216 (SFL216Q) /CSM/SF/SFL2-A/SFL216Q.Seq.d/                        351   4e-96
SFK508 (SFK508Q) /CSM/SF/SFK5-A/SFK508Q.Seq.d/                        351   4e-96
SFK142 (SFK142Q) /CSM/SF/SFK1-B/SFK142Q.Seq.d/                        351   4e-96
SFI831 (SFI831Q) /CSM/SF/SFI8-B/SFI831Q.Seq.d/                        351   4e-96
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC138398|AC138398.5 Mus musculus chromosome 5 clone RP23-309P20 map 5, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    34   0.100  6
AC116952|AC116952.4 Mus musculus chromosome 14 clone RP23-104A7, complete sequence.    38   0.12   6
AC107692|AC107692.7 Mus musculus chromosome 3, clone RP24-387H23, complete sequence.    38   0.12   4
AC102649|AC102649.4 Mus musculus chromosome 10 clone RP23-442N6 map 10, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34   0.12   5
AC102304|AC102304.2 Mus musculus clone RP24-403P14, WORKING DRAFT SEQUENCE, 34 unordered pieces.    34   0.18   4
AL929035|AL929035.14 Mouse DNA sequence from clone RP23-234F15 on chromosome 2.    34   0.20   5
AC137615|AC137615.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0053F13, from chromosome 5, complete sequence.    38   0.21   3
AE014852|AE014852.2 Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete sequence.    32   0.22   7
AL731725|AL731725.8 Mouse DNA sequence from clone RP23-146P19 on chromosome X.    34   0.28   4
AC116628|AC116628.4 Homo sapiens BAC clone RP11-369F24 from 2, complete sequence.    46   0.30   1
dna update 2004. 9.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU186001_1(EU186001|pid:none) Lilium longiflorum LIM1 mRNA, comp...    52   5e-06
EF035035_1(EF035035|pid:none) Populus tremula x Populus alba str...    52   5e-06
AC135208_4(AC135208|pid:none) Oryza sativa (japonica cultivar-gr...    52   5e-06
EF147317_1(EF147317|pid:none) Populus trichocarpa clone WS0122_J...    52   5e-06
AC160095_6(AC160095|pid:none) Solanum lycopersicum clone BB, com...    52   6e-06
EF148212_1(EF148212|pid:none) Populus trichocarpa clone WS0128_M...    52   6e-06
AF443117_1(AF443117|pid:none) Gossypium hirsutum LIM domain prot...    52   6e-06
AM475696_4(AM475696|pid:none) Vitis vinifera contig VV78X042996....    52   8e-06
EF035036_1(EF035036|pid:none) Populus tremula x Populus alba str...    52   8e-06
EF035040_1(EF035040|pid:none) Populus tremula x Populus alba LIM...    52   8e-06
protein update 2009. 4.23
PSORT 

 psg: 0.67  gvh: 0.55  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for AFJ328 is cyt
5' end seq. ID AFJ328F
5' end seq. 
>AFJ328F.Seq
GTATTATATTCTCTCTTTATTTCTTTTCTATATATAGATAAATTTTTTTTAGAAAAACTA
AAAAAAAACCTCAAACAATTAATACAAAANGGTAAACATNGGNGGAACTCAAGAAAAATG
TACTGCATGTGCTAAAACTGTATACTTAACAGANAAGATTGTAGTTGAAGATAAAGAAGA
TAAGAAAACTTTCCACAAATTATGTTTAANNCGNACTCACTGTAAGCTTACATTAAGNCT
TGGTAACTATGCATCATTAAATGGNGTATTCTATTG----------
Length of 5' end seq. 276
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -