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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHG805
Library SH
(Link to library)
Clone ID SHG805
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11297-1|Contig-U12785-1
Original site URL
Representative seq. ID SHG805P
(Link to Original site)
Representative DNA sequence 
>SHG805 (SHG805Q) /CSM/SH/SHG8-A/SHG805Q.Seq.d/
ATTTGATCCATTTTTCTTTTTCATACTCGCTCGCTCAACACACAAATTGTTGGAAAACAA
CATTTATTTAATCTATTTTTAAAAATATATATATTTGTGTTTGAGGTGTGTGTGTATATT
ATACATTTTATTTACATCAAATATTGTAAATAAATTATAAAAAAAAAAAAAAAAAAAAAA
AANGNGNGNNAAAAAAAAXXXXXXXXXXTGTTAGACAAATCGCAGAATCATTGTTTAACA
TTAATTTCGACTATCAAGAGGAACTCGATGAAATTGATGGTAGAATGGACGCTATCGATG
CATTCCATGAAAACCAAGAAGAATTACCACTTGATGAAAGAGAGGGTGAATTGGATGAAG
ATATTGTTAGACCATTACCATCAACCTTACCAGATCTTAAAGCACTCTCTGCAAAGATTA
GAAAGAATGAAGAGGAATCATTGAATATGATCGCCAATAAATACATCAACCAAGAAGTCA
ATGAAAAAACTGCAACCGAAGTATTGGATCAAATCTATGAAGCTTACAAAACCAATAATC
TCTTTGATAAGGATATCATTGAACACGATAAAAACACCATTAGAGAAGCAAATGGTGACG
TTGCAATTCCAGAATCTATGTACTTTGAATATGATACCACCTTTAGTGATTTGGTCGATA
GAGATGTCATCTTTAAAATGCCACTCAAAGATACTGATCTTGTTAGAGTTTTAACTCATC
AACTCACTGAAACTGGTCTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
lihfsfsyslaqhtncwkttfi*sifkniyicv*gvcvyytfylhqil*INYKKKKKKKK
XXXKK---

---VRQIAESLFNINFDYQEELDEIDGRMDAIDAFHENQEELPLDEREGELDEDIVRPLP
STLPDLKALSAKIRKNEEESLNMIANKYINQEVNEKTATEVLDQIYEAYKTNNLFDKDII
EHDKNTIREANGDVAIPESMYFEYDTTFSDLVDRDVIFKMPLKDTDLVRVLTHQLTETGL
Translated Amino Acid sequence (All Frames) 
Frame A:
i*siflfhtrslntqivgkqhlfnlflkiyifvfevcvyiihfiyikyck*iikkkkkkk
xxxxkk---

---c*tnrriiv*h*frlsrgtr*n*w*ngryrcip*kprritt**krg*ig*ryc*tit
inltrs*stlckd*ke*rgiieydrq*ihqprsq*kncnrsigsnl*slqnq*sl**gyh
*tr*khh*rskw*rcnsriyvl*i*yhl**fgr*rchl*natqry*sc*sfnssth*nws

Frame B:
fdpffffilarsthkllenniyliyf*kyiylclrcvcilyilftsnivnkl*kkkkkkk
xxxkk---

---VRQIAESLFNINFDYQEELDEIDGRMDAIDAFHENQEELPLDEREGELDEDIVRPLP
STLPDLKALSAKIRKNEEESLNMIANKYINQEVNEKTATEVLDQIYEAYKTNNLFDKDII
EHDKNTIREANGDVAIPESMYFEYDTTFSDLVDRDVIFKMPLKDTDLVRVLTHQLTETGL

Frame C:
lihfsfsyslaqhtncwkttfi*sifkniyicv*gvcvyytfylhqil*INYKKKKKKKK
XXXKK---

---ldksqnhcltlistikrnsmklmvewtlsmhsmktkknyhlmkervnwmkilldhyh
qpyqilkhslqrlermkrnh*i*spintstkksmkklqpkywiksmkltkpiislirisl
ntiktplekqmvtlqfqnlctlnmipplviwsiemsslkchskilillef*linslklvl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHG805 (SHG805Q) /CSM/SH/SHG8-A/SHG805Q.Seq.d/                       1057   0.0
AHN315 (AHN315Q) /CSM/AH/AHN3-A/AHN315Q.Seq.d/                       1041   0.0
VHJ730 (VHJ730Q) /CSM/VH/VHJ7-B/VHJ730Q.Seq.d/                       1027   0.0
VHF883 (VHF883Q) /CSM/VH/VHF8-D/VHF883Q.Seq.d/                        866   0.0
VHG193 (VHG193Q) /CSM/VH/VHG1-D/VHG193Q.Seq.d/                        301   8e-81
VSH626 (VSH626Q) /CSM/VS/VSH6-B/VSH626Q.Seq.d/                        291   8e-78
VSA214 (VSA214Q) /CSM/VS/VSA2-A/VSA214Q.Seq.d/                        250   3e-65
VSG739 (VSG739Q) /CSM/VS/VSG7-B/VSG739Q.Seq.d/                        240   3e-62
AHE462 (AHE462Q) /CSM/AH/AHE4-C/AHE462Q.Seq.d/                         90   6e-17
CHQ292 (CHQ292Q) /CSM/CH/CHQ2-D/CHQ292Q.Seq.d/                         42   0.012
own update 2003.10. 9
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CE185015|CE185015.1 tigr-gss-dog-17000326805563 Dog Library Canis familiaris genomic,genomic survey sequence.    44   0.004  2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   0.011  8
AZ261415|AZ261415.1 RPCI-23-150O1.TJ RPCI-23 Mus musculus genomic clone RPCI-23-150O1, DNA sequence.    38   0.015  2
BV259609|BV259609.1 S235P6521RH5.T0 ItalianGreyhound Canis familiaris STS genomic, sequence tagged site.    40   0.015  2
AZ279318|AZ279318.1 RPCI-23-121P14.TJ RPCI-23 Mus musculus genomic clone RPCI-23-121P14 , DNA sequence.    38   0.018  2
DU268801|DU268801.1 1098589007969 CHORI-243 Ovis aries genomic clone CH243-480B3, genomic survey sequence.    52   0.018  1
DU175948|DU175948.1 1098553246969 CHORI-243 Ovis aries genomic clone CH243-499O7, genomic survey sequence.    52   0.018  1
CR931742|CR931742.1 Medicago truncatula chromosome 5 clone mth2-28i20, COMPLETE  SEQUENCE.    52   0.018  1
BX000460|BX000460.5 Zebrafish DNA sequence from clone CH211-15E22 in linkage group 1.    40   0.018  5
AC129318|AC129318.4 Mus musculus BAC clone RP23-464B17 from chromosome 6, complete sequence.    38   0.045  2
dna update 2006. 4. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844508_99(AL844508|pid:none) Plasmodium falciparum strain 3D7,...    43   0.011
DQ887323_1(DQ887323|pid:none) Helicobacter pylori strain M18 hyp...    39   0.12
CR382400_18(CR382400|pid:none) Plasmodium falciparum chromosome ...    37   0.61
AE014187_471(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.61
BA000026_156(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    37   0.61
(Q09903) RecName: Full=ATP-dependent RNA helicase drs1;         ...    36   1.0
CP000498_544(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    36   1.0
AM910989_263(AM910989|pid:none) Plasmodium knowlesi strain H chr...    36   1.0
AY894835_26(AY894835|pid:none) Phytophthora infestans haplotype ...    36   1.4
AY898627_33(AY898627|pid:none) Phytophthora infestans haplotype ...    36   1.4
protein update 2009. 4.19
PSORT 

 psg: 0.43  gvh: 0.20  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.04
 nuc: 0.20  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: plasma membrane

>> prediction for SHG805 is nuc
5' end seq. ID SHG805F
5' end seq. 
>SHG805F.Seq
ATTTGATCCATTTTTCTTTTTCATACTCGCTCGCTCAACACACAAATTGTTGGAAAACAA
CATTTATTTAATCTATTTTTAAAAATATATATATTTGTGTTTGAGGTGTGTGTGTATATT
ATACATTTTATTTACATCAAATATTGTAAATAAATTATAAAAAAAAAAAAAAAAAAAAAA
AANGNGNGNNAAAAAAAANNNNNNNNNN
Length of 5' end seq. 208
3' end seq. ID SHG805Z
3' end seq. 
>SHG805Z.Seq
NNNNNNNNNNTGTTAGACAAATCGCAGAATCATTGTTTAACATTAATTTCGACTATCAAG
AGGAACTCGATGAAATTGATGGTAGAATGGACGCTATCGATGCATTCCATGAAAACCAAG
AAGAATTACCACTTGATGAAAGAGAGGGTGAATTGGATGAAGATATTGTTAGACCATTAC
CATCAACCTTACCAGATCTTAAAGCACTCTCTGCAAAGATTAGAAAGAATGAAGAGGAAT
CATTGAATATGATCGCCAATAAATACATCAACCAAGAAGTCAATGAAAAAACTGCAACCG
AAGTATTGGATCAAATCTATGAAGCTTACAAAACCAATAATCTCTTTGATAAGGATATCA
TTGAACACGATAAAAACACCATTAGAGAAGCAAATGGTGACGTTGCAATTCCAGAATCTA
TGTACTTTGAATATGATACCACCTTTAGTGATTTGGTCGATAGAGATGTCATCTTTAAAA
TGCCACTCAAAGATACTGATCTTGTTAGAGTTTTAACTCATCAACTCACTGAAACTGGTC
TTA
Length of 3' end seq. 543
Connected seq. ID SHG805P
Connected seq. 
>SHG805P.Seq
ATTTGATCCATTTTTCTTTTTCATACTCGCTCGCTCAACACACAAATTGTTGGAAAACAA
CATTTATTTAATCTATTTTTAAAAATATATATATTTGTGTTTGAGGTGTGTGTGTATATT
ATACATTTTATTTACATCAAATATTGTAAATAAATTATAAAAAAAAAAAAAAAAAAAAAA
AANGNGNGNNAAAAAAAA----------TGTTAGACAAATCGCAGAATCATTGTTTAACA
TTAATTTCGACTATCAAGAGGAACTCGATGAAATTGATGGTAGAATGGACGCTATCGATG
CATTCCATGAAAACCAAGAAGAATTACCACTTGATGAAAGAGAGGGTGAATTGGATGAAG
ATATTGTTAGACCATTACCATCAACCTTACCAGATCTTAAAGCACTCTCTGCAAAGATTA
GAAAGAATGAAGAGGAATCATTGAATATGATCGCCAATAAATACATCAACCAAGAAGTCA
ATGAAAAAACTGCAACCGAAGTATTGGATCAAATCTATGAAGCTTACAAAACCAATAATC
TCTTTGATAAGGATATCATTGAACACGATAAAAACACCATTAGAGAAGCAAATGGTGACG
TTGCAATTCCAGAATCTATGTACTTTGAATATGATACCACCTTTAGTGATTTGGTCGATA
GAGATGTCATCTTTAAAATGCCACTCAAAGATACTGATCTTGTTAGAGTTTTAACTCATC
AACTCACTGAAACTGGTCTTA
Length of connected seq. 731
Full length Seq ID -
Full length Seq. -
Length of full length seq. -