SHH758
Library SH
(Link to library)
Clone ID SHH758
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHH758 (SHH758Q) /CSM/SH/SHH7-C/SHH758Q.Seq.d/
ATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAGAAAT
AATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
LLSNNYFFFSFFLKFK**k**klilkkrnvkkk---


Translated Amino Acid sequence (All Frames)
Frame A:
iyyqitifsflsf*slnnrnnkn*y*kkgtlkk---


Frame B:
ftik*lfflfflfkv*iieiikinikkker*kk---


Frame C:
LLSNNYFFFSFFLKFK**k**klilkkrnvkkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP272 (VHP272Q) /CSM/VH/VHP2-C/VHP272Q.Seq.d/ 72 2e-12
VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/ 72 2e-12
SSD275 (SSD275Q) /CSM/SS/SSD2-D/SSD275Q.Seq.d/ 72 2e-12
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/ 72 2e-12
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/ 72 2e-12
SHL829 (SHL829Q) /CSM/SH/SHL8-B/SHL829Q.Seq.d/ 72 2e-12
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/ 72 2e-12
SHL817 (SHL817Q) /CSM/SH/SHL8-A/SHL817Q.Seq.d/ 72 2e-12
SHL781 (SHL781Q) /CSM/SH/SHL7-D/SHL781Q.Seq.d/ 72 2e-12
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/ 72 2e-12

own update 2002.12. 6
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 72 5e-15 2
AL034452|AL034452.8 Human DNA sequence from clone 682J15 on chromosome 6p11.2-12.3. Contains the 3' part of a novel Collagen triple helix repeat containing protein, ESTs, STSs, GSSs, genomic marker D6S257 and a ca repeat polymorphism. 48 0.037 1
AF438327|AF438327.1 Homo sapiens alpha 1 type XXI collagen precursor (COL21A1) gene, complete cds, alternatively spliced. 48 0.037 1
AC140904|AC140904.1 Homo sapiens chromosome 16 clone RP11-837J3, WORKING DRAFT SEQUENCE, 2 unordered pieces. 36 0.086 2
AC074294|AC074294.3 Homo sapiens chromosome 2 clone RP11-520D12, WORKING DRAFT SEQUENCE, 26 unordered pieces. 36 0.087 2
AF155875|AF155875.1 Homo sapiens clone MC169, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces. 36 0.089 2
BD453096|BD453096.1 Human source gene leading sequence, gene vector, gene targeting site and gene expression stragegy. 36 0.089 2
AC004902|AC004902.2 Homo sapiens PAC clone RP5-823F17 from 7q36, complete sequence. 36 0.089 2
CR847937|CR847937.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-255G17. 46 0.15 1
CL504041|CL504041.1 SAIL_733_A07.v2 SAIL Collection Arabidopsis thaliana genomic clone SAIL_733_A07.v2, genomic survey sequence. 46 0.15 1
dna update 2006. 4.17
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 32,061,510
protein update 2009. 4.21
PSORT -
5' end seq. ID SHH758F
5' end seq.
>SHH758F.Seq
ATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAATAGAAAT
AATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 112
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -