>SHI737 (SHI737Q) /CSM/SH/SHI7-B/SHI737Q.Seq.d/
ATACAATGACTTGGATAGAAGTTTTACCAGTTTTTGGTATCATTACAGGTGGTTTAGTTT
TTATGGGTGTTGGCTTAGATGCTGCTCATAGATTATTCCATTATGGAAAGCCACACAGAT
ATGCAAGAGAGAGAGTTGAATACAGAATGGAAGCACGTGACGAACATATTTTACACTACA
GATCGATTAAAGATAATCCTAAGAAACTACAAAGAGAATTTAATAAAATATTCGAAAAAA
AGTGAAACTAATCAATCACACATAGATAATTCAAAAGTAATAACAAATAAATAAAAAAAA
TGAACAATAAATAAAAATGATAAAGAAATGTTTTAATATAAAAAAGTAAAATAAAAAACA
CATTACAAATAGGAGATATGGATAATATATACAGCACAAAAAAATAAAAAAAAAAXXXXX
XXXXX

TMTWIEVLPVFGIITGGLVFMGVGLDAAHRLFHYGKPHRYARERVEYRMEARDEHILHYR
SIKDNPKKLQREFNKIFEKK*n*sithr*fksnnk*ikkmnnk*k**rnvli*kskiknt
lqigdmdniystkk*kk---

Frame A:
iq*lg*kfyqflvslqvv*flwvla*mllidysimeshtdmqerelntewkhvtnifytt
drlkiilrnykenlikyskksetnqshidnskvitnk*kk*tinkndkemf*ykkvk*kt
hyk*eiwiiytaqknkkk---


Frame B:
yndldrsftsfwyhyrwfsfygcwlrccs*iiplwkatqickres*iqngst*rtyftlq
id*r*s*ettkri**nirkkvklinht*iiqk**qinkkneq*ikmikkcfnikk*nkkh
itnrryg*yiqhkkikk---


Frame C:
TMTWIEVLPVFGIITGGLVFMGVGLDAAHRLFHYGKPHRYARERVEYRMEARDEHILHYR
SIKDNPKKLQREFNKIFEKK*n*sithr*fksnnk*ikkmnnk*k**rnvli*kskiknt
lqigdmdniystkk*kk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHI737 (SHI737Q) /CSM/SH/SHI7-B/SHI737Q.Seq.d/                        498   e-140
AHL841 (AHL841Q) /CSM/AH/AHL8-B/AHL841Q.Seq.d/                        490   e-138
VHQ421 (VHQ421Q) /CSM/VH/VHQ4-A/VHQ421Q.Seq.d/                         36   0.41
AFB641 (AFB641Q) /CSM/AF/AFB6-B/AFB641Q.Seq.d/                         34   1.6
VSD315 (VSD315Q) /CSM/VS/VSD3-A/VSD315Q.Seq.d/                         32   6.4
VHO550 (VHO550Q) /CSM/VH/VHO5-C/VHO550Q.Seq.d/                         32   6.4
VHH816 (VHH816Q) /CSM/VH/VHH8-A/VHH816Q.Seq.d/                         32   6.4
VFB230 (VFB230Q) /CSM/VF/VFB2-B/VFB230Q.Seq.d/                         32   6.4
SSM495 (SSM495Q) /CSM/SS/SSM4-D/SSM495Q.Seq.d/                         32   6.4
SSM113 (SSM113Q) /CSM/SS/SSM1-A/SSM113Q.Seq.d/                         32   6.4

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DR717430|DR717430.1 AGENCOURT_55092008 NIH_ZGC_7 Danio rerio cDNA clone IMAGE:7991963 5', mRNA sequence.    46   0.65   1
AL731657|AL731657.18 Mouse DNA sequence from clone RP23-303D18 on chromosome 13.    46   0.65   1
BI509841|BI509841.1 BB170023A10E11.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170023A10E11 5', mRNA sequence.    44   2.6    1
BI504172|BI504172.1 BB170003A10B03.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170003A10B03 5', mRNA sequence.    44   2.6    1
BG135405|BG135405.1 EST468297 tomato crown gall Lycopersicon esculentum cDNA clone cTOE22B11 5' sequence, mRNA sequence.    44   2.6    1
AR584244|AR584244.1 Sequence 1 from patent US 6797466.             44   2.6    1
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             44   2.6    1
BH957065|BH957065.1 odi07f02.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    44   2.6    1
L77117|L77117.1 Methanocaldococcus jannaschii DSM 2661, complete genome.    44   2.6    1
AF391293|AF391293.1 Branchiostoma floridae cosmid MPMGc117K0849, partial sequence.    40   7.6    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT048019_1(BT048019|pid:none) Salmo salar clone ssal-evd-571-300...    39   0.071
(P48935) RecName: Full=Succinate dehydrogenase cytochrome b560 s...    38   0.12
AC137619_8(AC137619|pid:none) Oryza sativa (japonica cultivar-gr...    37   0.16
AM292340_1(AM292340|pid:none) Tribolium castaneum gr19 gene for ...    37   0.27
BT046880_1(BT046880|pid:none) Salmo salar clone ssal-eve-506-342...    35   0.60
AC012562_8(AC012562|pid:none) Arabidopsis thaliana chromosome 3 ...    35   0.60
T31613(T31613)hypothetical protein Y50E8A.i - Caenorhabditis ele...    34   1.3
AM269894_60(AM269894|pid:none) Eimeria tenella chromosome 1, ord...    34   1.7
(O35683) RecName: Full=NADH dehydrogenase [ubiquinone] 1 alpha s...    34   1.7
AE014185_190(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    34   1.7

 psg: 0.75  gvh: 0.45  alm: 0.26  top: 0.77  tms: 0.07  mit: 0.12  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SHI737 is cyt

>SHI737F.Seq
ATACAATGACTTGGATAGAAGTTTTACCAGTTTTTGGTATCATTACAGGTGGTTTAGTTT
TTATGGGTGTTGGCTTAGATGCTGCTCATAGATTATTCCATTATGGAAAGCCACACAGAT
ATGCAAGAGAGAGAGTTGAATACAGAATGGAAGCACGTGACGAACATATTTTACACTACA
GATCGATTAAAGATAATCCTAAGAAACTACAAAGAGAATTTAATAAAATATTCGAAAAAA
AGTGAAACTAATCAATCACACATAGATAATTCAAAAGTAATAACAAATAAATAAAAAAAA
TGAACAATAAATAAAAATGATAAAGAAATGTTTTAATATAAAAAAGTAAAATAAAAAACA
CATTACAAATAGGAGATATGGATAATATATACAGCACAAAAAAATAAAAAAAAAANNNNN
NNNNN