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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHJ370
Library SH
(Link to library)
Clone ID SHJ370
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHJ370 (SHJ370Q) /CSM/SH/SHJ3-C/SHJ370Q.Seq.d/
TGGAAAAATTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAAT
AGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
EKLLSNNYFFFSFFLKFK**k**klilkkrnvkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
wknyyqitifsflsf*slnnrnnkn*y*kkgtlkk---


Frame B:
gkitik*lfflfflfkv*iieiikinikkker*kk---


Frame C:
EKLLSNNYFFFSFFLKFK**k**klilkkrnvkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ370 (SHJ370Q) /CSM/SH/SHJ3-C/SHJ370Q.Seq.d/                         50   7e-06
VHP272 (VHP272Q) /CSM/VH/VHP2-C/VHP272Q.Seq.d/                         46   1e-04
VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                         46   1e-04
SSD275 (SSD275Q) /CSM/SS/SSD2-D/SSD275Q.Seq.d/                         46   1e-04
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                         46   1e-04
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                         46   1e-04
SHL829 (SHL829Q) /CSM/SH/SHL8-B/SHL829Q.Seq.d/                         46   1e-04
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                         46   1e-04
SHL817 (SHL817Q) /CSM/SH/SHL8-A/SHL817Q.Seq.d/                         46   1e-04
SHL781 (SHL781Q) /CSM/SH/SHL7-D/SHL781Q.Seq.d/                         46   1e-04
own update 2002.12. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.    46   3e-06  2
CR749744|CR749744.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-167I16.    32   1.2    2
CR751563|CR751563.13 Zebrafish DNA sequence from clone CH211-203C10 in linkage group 13.    32   1.3    2
AQ428967|AQ428967.1 CITBI-E1-2556L10.TF CITBI-E1 Homo sapiens genomic clone 2556L10, genomic survey sequence.    42   2.4    1
AQ426571|AQ426571.1 CITBI-E1-2556L9.TF CITBI-E1 Homo sapiens genomic clone 2556L9, genomic survey sequence.    42   2.4    1
AL365265|AL365265.23 Human DNA sequence from clone RP11-401E14 on chromosome 6.    42   2.4    1
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    38   2.9    2
CK462653|CK462653.1 933465 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence.    36   3.1    2
CK455557|CK455557.1 916149 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence.    36   3.2    2
CK462292|CK462292.1 933081 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence.    36   3.2    2
dna update 2006. 5.12
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 36,895,848
protein update 2009. 4.22
PSORT -
5' end seq. ID SHJ370F
5' end seq. 
>SHJ370F.Seq
TGGAAAAATTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAATAAT
AGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 118
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -