>SHJ432 (SHJ432Q) /CSM/SH/SHJ4-B/SHJ432Q.Seq.d/
ATAAGCAAAGTTAAAGATATAGTTTTACATGTTGAACAATTACAAGAACAAAATCATAAT
AATAATAATAATAATAATAATACTCCAAAACAAAAAAGAGAATAAATTAATTGAATAAAA
AAAAAAAAATNTAAAAAGGTNTAATAATAATAATCAAATCAATTTTNGTTAAATAATAAA
AAAATAAAATTTAAAAAATATAAAATAAAATAAAATAAAATAAAATTATNTATGAATAAT
ATTTATNTGGAAAAAAAAAAXXXXXXXXXX

ISKVKDIVLHVEQLQEQNHNNNNNNNNTPKQKRE*in*ikkkkxkkv****snqfxlnnk
kikfkkykik*nkiklxmnniyxekk---

Frame A:
ISKVKDIVLHVEQLQEQNHNNNNNNNNTPKQKRE*in*ikkkkxkkv****snqfxlnnk
kikfkkykik*nkiklxmnniyxekk---


Frame B:
*aklki*fymlnnyknkiiiiiiiiiilqnkkenklie*kkknxkrxnnnnqinfx*iik
k*nlknik*nkik*nyx*iifxwkkk---


Frame C:
kqs*rysftc*titrtks********ysktkkrin*lnkkkkx*kgxiiiiksixvk**k
nki*ki*nkik*nkixye*ylxgkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFK821 (VFK821Q) /CSM/VF/VFK8-A/VFK821Q.Seq.d/                        109   2e-23
SHJ432 (SHJ432Q) /CSM/SH/SHJ4-B/SHJ432Q.Seq.d/                        109   2e-23
CHJ856 (CHJ856Q) /CSM/CH/CHJ8-C/CHJ856Q.Seq.d/                        109   2e-23
CHH532 (CHH532Q) /CSM/CH/CHH5-B/CHH532Q.Seq.d/                        109   2e-23
AHO432 (AHO432Q) /CSM/AH/AHO4-B/AHO432Q.Seq.d/                        109   2e-23
AHL837 (AHL837Q) /CSM/AH/AHL8-B/AHL837Q.Seq.d/                        109   2e-23
SHJ661 (SHJ661Q) /CSM/SH/SHJ6-C/SHJ661Q.Seq.d/                         98   8e-20
CHM488 (CHM488Q) /CSM/CH/CHM4-D/CHM488Q.Seq.d/                         98   8e-20
VFG630 (VFG630Q) /CSM/VF/VFG6-B/VFG630Q.Seq.d/                         34   1.0
SSA312 (SSA312Q) /CSM/SS/SSA3-A/SSA312Q.Seq.d/                         34   1.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BF277547|BF277547.1 GA__Eb0030J19f Gossypium arboreum 7-10 dpa fiber library Gossypiumarboreum cDNA clone GA__Eb0030J19f, mRNA sequence.    44   1.6    1
CV012291|CV012291.1 zfi01-7ms4-f03 Zfi01 Zamia fischeri cDNA clone zfi01-7ms4-f03 5', mRNA sequence.    44   1.6    1
BZ869767|BZ869767.1 CH240_203H22.TV CHORI-240 Bos taurus genomic clone CH240_203H22, DNA sequence.    44   1.6    1
CZ506448|CZ506448.1 GMW2-25A3a.g1 GMW2 Glycine max genomic, genomic survey sequence.    44   1.6    1
AL355885|AL355885.4 Human chromosome 14 DNA sequence BAC R-434O22 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    44   1.6    1
AL671995|AL671995.4 Mouse DNA sequence from clone RP23-109E24 on chromosome X.    44   1.6    1
BU443620|BU443620.1 603210037F1 CSEQRBN11 Gallus gallus cDNA clone ChEST187j9 5', mRNA sequence.    34   5.4    2
T39097|T39097.1 EST104668 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    42   6.3    1
CJ756799|CJ756799.1 Ipomoea nil cDNA clone:jmsf13g16, 3' end.      42   6.3    1
CJ756448|CJ756448.1 Ipomoea nil cDNA clone:jmsf12g16, 3' end.      42   6.3    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 86,239,126

 psg: 0.74  gvh: 0.18  alm: 0.64  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SHJ432 is nuc

>SHJ432F.Seq
ATAAGCAAAGTTAAAGATATAGTTTTACATGTTGAACAATTACAAGAACAAAATCATAAT
AATAATAATAATAATAATAATACTCCAAAACAAAAAAGAGAATAAATTAATTGAATAAAA
AAAAAAAAATNTAAAAAGGTNTAATAATAATAATCAAATCAATTTTNGTTAAATAATAAA
AAAATAAAATTTAAAAAATATAAAATAAAATAAAATAAAATAAAATTATNTATGAATAAT
ATTTATNTGGAAAAAAAAAANNNNNNNNNN