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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHK387
Library SH
(Link to library)
Clone ID SHK387
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16259-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHK387 (SHK387Q) /CSM/SH/SHK3-D/SHK387Q.Seq.d/
TATTTTTCATTTTATTAAAATTAATAATATATAATATATAATATATATATTACTTTTACT
AATATATATTTTTTTAATTTAAAAAAATGTTAATAAATAAAATTTTATTTTTATTTTTTT
ATTCTATCACTAACAATATTTAATATTGTTGATGCTGGTTATACTTTATCTGTTAAAGGA
AAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAAATTACTGAAATTTTGTTAACT
TCCCAAAAAATATTACCAGATTACTCAATTACATTCACTTGTGAAATTCCATCTGCCAAT
AGCCCTGTTTGTACGAGTATGGATATGGACCTTACAAAATTAGCTGGAAAATTAACTCTA
AGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCCTATGATATTAAAGCCAATCAA
ATTCCACTACCATTACCAACTGAGGTTAAATGGGAACCACCAACAATGGCTGGTACAGCT
GCTCTTATGACTGGAGATTTCTTATTATTTGGTGAAGATGTTACAACTCXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
yfsfy*n**yiiyniyitftniyffnlkkc**IKFYFYFFILSLTIFNIVDAGYTLSVKG
KKLIYTGANVDFKITEILLTSQKILPDYSITFTCEIPSANSPVCTSMDMDLTKLAGKLTL
RGANLKTPNIVIAYDIKANQIPLPLPTEVKWEPPTMAGTAALMTGDFLLFGEDVTT---
Translated Amino Acid sequence (All Frames) 
Frame A:
yfsfy*n**yiiyniyitftniyffnlkkc**IKFYFYFFILSLTIFNIVDAGYTLSVKG
KKLIYTGANVDFKITEILLTSQKILPDYSITFTCEIPSANSPVCTSMDMDLTKLAGKLTL
RGANLKTPNIVIAYDIKANQIPLPLPTEVKWEPPTMAGTAALMTGDFLLFGEDVTT---


Frame B:
ifhfikinni*yiiyilllliyifli*knvnk*nfififlfyh*qylillmlvilyllke
ks*yilvpm*iskllkfc*lpkkyyqitqlhslvkfhlpialfvrvwiwtlqn*len*l*
geqi*kpqi**lpmilkpikfhyhyqlrlngnhqqwlvqlll*leisyylvkmlq---


Frame C:
ffillkliiyni*yiyyfy*yiff*fkkmlinkilflffysitnni*yc*cwlyfic*rk
kvniywcqcrfqny*nfvnfpknitrllnyihl*nsicq*pclyeygygpykiswkinsk
gskfknpkysncl*y*sqsnsttitn*g*mgttnngwyscsydwrfliiw*rcyn---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK387 (SHK387Q) /CSM/SH/SHK3-D/SHK387Q.Seq.d/                        811   0.0
AHJ459 (AHJ459Q) /CSM/AH/AHJ4-C/AHJ459Q.Seq.d/                        811   0.0
SHB874 (SHB874Q) /CSM/SH/SHB8-D/SHB874Q.Seq.d/                        803   0.0
SHL869 (SHL869Q) /CSM/SH/SHL8-C/SHL869Q.Seq.d/                        803   0.0
SHL629 (SHL629Q) /CSM/SH/SHL6-B/SHL629Q.Seq.d/                        803   0.0
SHL434 (SHL434Q) /CSM/SH/SHL4-B/SHL434Q.Seq.d/                        803   0.0
SHL431 (SHL431Q) /CSM/SH/SHL4-B/SHL431Q.Seq.d/                        803   0.0
SHL371 (SHL371Q) /CSM/SH/SHL3-C/SHL371Q.Seq.d/                        803   0.0
SHL351 (SHL351Q) /CSM/SH/SHL3-C/SHL351Q.Seq.d/                        803   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strainAX4, complete sequence.    38   0.052  7
AE014852|AE014852.2 Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete sequence.    40   0.36   6
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    40   0.47   5
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           46   0.84   1
CE815366|CE815366.1 tigr-gss-dog-17000318377218 Dog Library Canis familiaris genomic, genomic survey sequence.    46   0.84   1
CZ518228|CZ518228.1 GMW2-73G17a.b1 GMW2 Glycine max genomic, genomic survey sequence.    46   0.84   1
DY895079|DY895079.1 CeleSEQ14806 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ14806, mRNA sequence.    44   3.3    1
CK295567|CK295567.1 EST758281 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMCV80 5' end, mRNA sequence.    44   3.3    1
AV229624|AV229624.1 Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4631416A17, 3' end partial sequence.    44   3.3    1
AC126969|AC126969.3 Rattus norvegicus clone CH230-197P4, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44   3.3    1
dna update 2006. 6.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000356_376(CP000356|pid:none) Sphingopyxis alaskensis RB2256, ...    33   3.4
CP000685_1388(CP000685|pid:none) Flavobacterium johnsoniae UW101...    33   5.8
protein update 2009. 1.17
PSORT 

 psg: 0.97  gvh: 0.61  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 24.0 %: extracellular, including cell wall
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SHK387 is cyt
5' end seq. ID SHK387F
5' end seq. 
>SHK387F.Seq
TATTTTTCATTTTATTAAAATTAATAATATATAATATATAATATATATATTACTTTTACT
AATATATATTTTTTTAATTTAAAAAAATGTTAATAAATAAAATTTTATTTTTATTTTTTT
ATTCTATCACTAACAATATTTAATATTGTTGATGCTGGTTATACTTTATCTGTTAAAGGA
AAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAAATTACTGAAATTTTGTTAACT
TCCCAAAAAATATTACCAGATTACTCAATTACATTCACTTGTGAAATTCCATCTGCCAAT
AGCCCTGTTTGTACGAGTATGGATATGGACCTTACAAAATTAGCTGGAAAATTAACTCTA
AGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCCTATGATATTAAAGCCAATCAA
ATTCCACTACCATTACCAACTGAGGTTAAATGGGAACCACCAACAATGGCTGGTACAGCT
GCTCTTATGACTGGAGATTTCTTATTATTTGGTGAAGATGTTACAACTCNNNNNNNNNN
Length of 5' end seq. 539
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -