AFJ789
Library AF
(Link to library)
Clone ID AFJ789
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15522-1
Original site URL
Representative seq. ID AFJ789P
(Link to Original site)
Representative DNA sequence
>AFJ789 (AFJ789Q) /CSM/AF/AFJ7-D/AFJ789Q.Seq.d/
TTAAAATTCAAATTATCAACAACATGGCAGAAAATAATAATAATAATAATAATAATAATA
ATAATAATGTTTCAACACCACCACATCAAAAACCACATTTAACAACTGGTTTAAGAACTT
CAAGTTCTGGTTTATTAATGGATAAAAGAAGACAAGATGAAGAAAAATTTTCAGCTGAAC
AAGTAGCAATGGGTAAAAAATCACCAACAAAATTATTCTCAGCATACAGCTTAAATGATT
TATCAAATCCACCAACAGATGAAGAATTAAATAACTATAAGGATTTACCAGCATCAAGTC
TTCCACCAATTCATAAAAGAGAGAAATTAAGAAGAGTATTTGTAAATAGAGATATTAAAC
TCGACAGAATTGAATTCTTTGGTTTTGATATGGATTATACATTAGCAGTTTATAATTCAC
CAGATTTTGAAGAGTTGGCATATGATATGGTACTTGATAAACTCATTGATATTGGTTATC
CAAAATCAATTAGAAAATTAAAATATGATCCAAATTTCCCAACTAGAGGTTTATTTTTAG
ATAGAGAACTTGGTAACCTTTTAAAAATTGATAGTTTTGGTAACATTATCAXXXXXXXXX
XTATTACACAAATAAAGTTATGTCATATATGATGAATGGATATAATCCAAACTATCAATC
ATGGAGAGATTATTTTGATGTTATTATTGTTGGTGCAGATAAACCAAGATTCTTTTCAGA
AGGTACAACAATTAGAGAAGTTGATACTGAAACTGGTAATTTAAGAATTACAAATGTAAA
GGATAGATTTGAACAAGGTAAAGTTTATCATGGTGGTTCTTTATCATTATTCCAAAAATT
AACAGGAGCAAAAGGTAGTAGAGTACTTTACATTGGTGATCATATCTTTGCAGATATCAT
TAAATCAAAGAAAACTCATGGATGGAGAAATCTATTGGTTGTACCAGAACTTCAACATGA
ATTAGAGGTTATGAATCAACAAAAAGATACAACCATTCATTTGATGAATCTTGAATTCAT
TAGAGCTGAAATCTATAGAGGCTTAGATTCTGAATCAACCACCCCACCAGATATTGAAGT
TCTCCATCAACATCTTAAAAATACAAATGATAAATTGAACTTTGCCTACAACAAATACTT
TGGTTCCCTCTTTAAAAATGGTTCAAAATCAACTTTCTTCTCTATGCAAGTTCAAAGATA
TGCTGATCTTTACACCTCNGATTATCTCAATCTCTTAAACTATCCATTATTTTATCATTT
TTGTGCAAAAGTTTACCTCTTCCACANAAAGTTCTTCTTTCTCTTCTTTNATACAAGAAT
TAATAAATAAAGAAAANAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
KIQIINNMAENNNNNNNNNNNNVSTPPHQKPHLTTGLRTSSSGLLMDKRRQDEEKFSAEQ
VAMGKKSPTKLFSAYSLNDLSNPPTDEELNNYKDLPASSLPPIHKREKLRRVFVNRDIKL
DRIEFFGFDMDYTLAVYNSPDFEELAYDMVLDKLIDIGYPKSIRKLKYDPNFPTRGLFLD
RELGNLLKIDSFGNII---

---YYTNKVMSYMMNGYNPNYQSWRDYFDVIIVGADKPRFFSEGTTIREVDTETGNLRIT
NVKDRFEQGKVYHGGSLSLFQKLTGAKGSRVLYIGDHIFADIIKSKKTHGWRNLLVVPEL
QHELEVMNQQKDTTIHLMNLEFIRAEIYRGLDSESTTPPDIEVLHQHLKNTNDKLNFAYN
KYFGSLFKNGSKSTFFSMQVQRYADLYTSDYLNLLNYPLFYHFCAKVYLFHXKFFFLFFX
TRINK*rkx


Translated Amino Acid sequence (All Frames)
Frame A:
lkfklsttwqkiiiiiiiiiiimfqhhhiknhi*qlv*elqvlvy*wikedkmkknfqln
k*qwvknhqqnysqhta*miyqihqqmkn*itiriyqhqvfhqfikern*eeyl*ieiln
stelnslvliwiih*qfiihqilkswhmiwylinslilviqnqlen*nmiqisqlevyf*
ienlvtf*klivlvtls---

---YYTNKVMSYMMNGYNPNYQSWRDYFDVIIVGADKPRFFSEGTTIREVDTETGNLRIT
NVKDRFEQGKVYHGGSLSLFQKLTGAKGSRVLYIGDHIFADIIKSKKTHGWRNLLVVPEL
QHELEVMNQQKDTTIHLMNLEFIRAEIYRGLDSESTTPPDIEVLHQHLKNTNDKLNFAYN
KYFGSLFKNGSKSTFFSMQVQRYADLYTSDYLNLLNYPLFYHFCAKVYLFHXKFFFLFFX
TRINK*rkx

Frame B:
*nsnyqqhgrk***********cfntttskttfnnwfknfkfwfing*kktr*rkifs*t
ssng*kitnkiilsiqlk*fikstnr*rik*l*gftsiksstns*kreikksick*ry*t
rqn*ilwf*yglyissl*ftrf*rvgi*ygt**th*ywlskin*kiki*skfpn*rfifr
*rtw*pfkn**fw*hy---

---itqiklchi**mdiiqtinhgeiilmllllvqinqdsfqkvqqleklilklvi*elq
m*ridlnkvkfimvvlyhyskn*qeqkvveyftlviislqislnqrklmdgeiywlyqnf
nmn*rl*inkkiqpfi**ilnslelksiea*ilnqpphqilkfsinilkiqmin*tlptt
ntlvpslkmvqnqlsslckfkdmliftpxiisis*tihyfiifvqkftsstxsssfssxi
qelinkexk

Frame C:
KIQIINNMAENNNNNNNNNNNNVSTPPHQKPHLTTGLRTSSSGLLMDKRRQDEEKFSAEQ
VAMGKKSPTKLFSAYSLNDLSNPPTDEELNNYKDLPASSLPPIHKREKLRRVFVNRDIKL
DRIEFFGFDMDYTLAVYNSPDFEELAYDMVLDKLIDIGYPKSIRKLKYDPNFPTRGLFLD
RELGNLLKIDSFGNII---

---lhk*syviydewi*sklsimerlf*cyycwcr*tkilfrrynn*rs*y*nw*fknyk
ckg*i*tr*slswwffiiipkinrskr**stlhw*sylcryh*ikenswmeksigctrts
t*irgyestkrynhsfdes*ih*s*nl*rlrf*inhptry*sspsts*kyk**ielclqq
ilwfpl*kwfkinfllyasskic*slhlxlsqslklsiilsflckslplpxkvllsllxy
kn**ikkx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFJ789 (AFJ789Q) /CSM/AF/AFJ7-D/AFJ789Q.Seq.d/ 2438 0.0
VFH524 (VFH524Q) /CSM/VF/VFH5-A/VFH524Q.Seq.d/ 1388 0.0
AFJ814 (AFJ814Q) /CSM/AF/AFJ8-A/AFJ814Q.Seq.d/ 1386 0.0
SFJ610 (SFJ610Q) /CSM/SF/SFJ6-A/SFJ610Q.Seq.d/ 1378 0.0
VHH636 (VHH636Q) /CSM/VH/VHH6-B/VHH636Q.Seq.d/ 1368 0.0
AFF109 (AFF109Q) /CSM/AF/AFF1-A/AFF109Q.Seq.d/ 1354 0.0
SFF696 (SFF696Q) /CSM/SF/SFF6-D/SFF696Q.Seq.d/ 1342 0.0
CFI768 (CFI768Q) /CSM/CF/CFI7-C/CFI768Q.Seq.d/ 1340 0.0
CFK414 (CFK414Q) /CSM/CF/CFK4-A/CFK414Q.Seq.d/ 1326 0.0
SFE254 (SFE254Q) /CSM/SF/SFE2-C/SFE254Q.Seq.d/ 1310 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 44 0.006 12
AC120206|AC120206.2 Canis familiaris clone RP81-219C14, WORKING DRAFT SEQUENCE, 7 ordered pieces. 56 0.012 3
CC008913|CC008913.1 PUDEI80TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa168M15, DNA sequence. 44 0.050 2
BB845391|BB845391.1 Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:F520005H13, 5' end partial sequence. 46 0.067 2
AC108322|AC108322.4 Rattus norvegicus clone CH230-261G16, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 50 0.074 1
BB392891|BB392891.1 Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230081A07, 3' end partial sequence. 50 0.074 1
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 36 0.11 15
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 34 0.14 9
AC117531|AC117531.2 Homo sapiens chromosome 5 clone RP11-603O17, complete sequence. 42 0.15 6
AC035141|AC035141.3 Homo sapiens chromosome 5 clone CTD-2010H15, WORKING DRAFT SEQUENCE, 10 ordered pieces. 44 0.18 4
dna update 2003. 9. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54XC1) RecName: Full=Cytosolic purine 5'-nucleotidase; ... 461 e-128
AE014298_2834(AE014298|pid:none) Drosophila melanogaster chromos... 208 4e-52
AE014298_2835(AE014298|pid:none) Drosophila melanogaster chromos... 208 4e-52
AE014298_2830(AE014298|pid:none) Drosophila melanogaster chromos... 208 4e-52
AE014298_2833(AE014298|pid:none) Drosophila melanogaster chromos... 208 4e-52
BC064760_1(BC064760|pid:none) Mus musculus 5'-nucleotidase, cyto... 202 3e-50
AK036730_1(AK036730|pid:none) Mus musculus adult male bone cDNA,... 202 3e-50
AK132384_1(AK132384|pid:none) Mus musculus 15 days embryo head c... 202 3e-50
(Q3V1L4) RecName: Full=Cytosolic purine 5'-nucleotidase; ... 202 3e-50
AK291667_1(AK291667|pid:none) Homo sapiens cDNA FLJ75877 complet... 202 3e-50
protein update 2009. 4.24
PSORT

psg: 0.67 gvh: 0.39 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.07
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for AFJ789 is cyt

5' end seq. ID AFJ789F
5' end seq.
>AFJ789F.Seq
TTAAAATTCAAATTATCAACAACATGGCAGAAAATAATAATAATAATAATAATAATAATA
ATAATAATGTTTCAACACCACCACATCAAAAACCACATTTAACAACTGGTTTAAGAACTT
CAAGTTCTGGTTTATTAATGGATAAAAGAAGACAAGATGAAGAAAAATTTTCAGCTGAAC
AAGTAGCAATGGGTAAAAAATCACCAACAAAATTATTCTCAGCATACAGCTTAAATGATT
TATCAAATCCACCAACAGATGAAGAATTAAATAACTATAAGGATTTACCAGCATCAAGTC
TTCCACCAATTCATAAAAGAGAGAAATTAAGAAGAGTATTTGTAAATAGAGATATTAAAC
TCGACAGAATTGAATTCTTTGGTTTTGATATGGATTATACATTAGCAGTTTATAATTCAC
CAGATTTTGAAGAGTTGGCATATGATATGGTACTTGATAAACTCATTGATATTGGTTATC
CAAAATCAATTAGAAAATTAAAATATGATCCAAATTTCCCAACTAGAGGTTTATTTTTAG
ATAGAGAACTTGGTAACCTTTTAAAAATTGATAGTTTTGGTAACATTATCA---------
-
Length of 5' end seq. 591
3' end seq. ID AFJ789Z
3' end seq.
>AFJ789Z.Seq
----------TATTACACAAATAAAGTTATGTCATATATGATGAATGGATATAATCCAAA
CTATCAATCATGGAGAGATTATTTTGATGTTATTATTGTTGGTGCAGATAAACCAAGATT
CTTTTCAGAAGGTACAACAATTAGAGAAGTTGATACTGAAACTGGTAATTTAAGAATTAC
AAATGTAAAGGATAGATTTGAACAAGGTAAAGTTTATCATGGTGGTTCTTTATCATTATT
CCAAAAATTAACAGGAGCAAAAGGTAGTAGAGTACTTTACATTGGTGATCATATCTTTGC
AGATATCATTAAATCAAAGAAAACTCATGGATGGAGAAATCTATTGGTTGTACCAGAACT
TCAACATGAATTAGAGGTTATGAATCAACAAAAAGATACAACCATTCATTTGATGAATCT
TGAATTCATTAGAGCTGAAATCTATAGAGGCTTAGATTCTGAATCAACCACCCCACCAGA
TATTGAAGTTCTCCATCAACATCTTAAAAATACAAATGATAAATTGAACTTTGCCTACAA
CAAATACTTTGGTTCCCTCTTTAAAAATGGTTCAAAATCAACTTTCTTCTCTATGCAAGT
TCAAAGATATGCTGATCTTTACACCTCNGATTATCTCAATCTCTTAAACTATCCATTATT
TTATCATTTTTGTGCAAAAGTTTACCTCTTCCACANAAAGTTCTTCTTTCTCTTCTTTNA
TACAAGAATTAATAAATAAAGAAAANAAA
Length of 3' end seq. 739
Connected seq. ID AFJ789P
Connected seq.
>AFJ789P.Seq
TTAAAATTCAAATTATCAACAACATGGCAGAAAATAATAATAATAATAATAATAATAATA
ATAATAATGTTTCAACACCACCACATCAAAAACCACATTTAACAACTGGTTTAAGAACTT
CAAGTTCTGGTTTATTAATGGATAAAAGAAGACAAGATGAAGAAAAATTTTCAGCTGAAC
AAGTAGCAATGGGTAAAAAATCACCAACAAAATTATTCTCAGCATACAGCTTAAATGATT
TATCAAATCCACCAACAGATGAAGAATTAAATAACTATAAGGATTTACCAGCATCAAGTC
TTCCACCAATTCATAAAAGAGAGAAATTAAGAAGAGTATTTGTAAATAGAGATATTAAAC
TCGACAGAATTGAATTCTTTGGTTTTGATATGGATTATACATTAGCAGTTTATAATTCAC
CAGATTTTGAAGAGTTGGCATATGATATGGTACTTGATAAACTCATTGATATTGGTTATC
CAAAATCAATTAGAAAATTAAAATATGATCCAAATTTCCCAACTAGAGGTTTATTTTTAG
ATAGAGAACTTGGTAACCTTTTAAAAATTGATAGTTTTGGTAACATTATCA---------
-TATTACACAAATAAAGTTATGTCATATATGATGAATGGATATAATCCAAACTATCAATC
ATGGAGAGATTATTTTGATGTTATTATTGTTGGTGCAGATAAACCAAGATTCTTTTCAGA
AGGTACAACAATTAGAGAAGTTGATACTGAAACTGGTAATTTAAGAATTACAAATGTAAA
GGATAGATTTGAACAAGGTAAAGTTTATCATGGTGGTTCTTTATCATTATTCCAAAAATT
AACAGGAGCAAAAGGTAGTAGAGTACTTTACATTGGTGATCATATCTTTGCAGATATCAT
TAAATCAAAGAAAACTCATGGATGGAGAAATCTATTGGTTGTACCAGAACTTCAACATGA
ATTAGAGGTTATGAATCAACAAAAAGATACAACCATTCATTTGATGAATCTTGAATTCAT
TAGAGCTGAAATCTATAGAGGCTTAGATTCTGAATCAACCACCCCACCAGATATTGAAGT
TCTCCATCAACATCTTAAAAATACAAATGATAAATTGAACTTTGCCTACAACAAATACTT
TGGTTCCCTCTTTAAAAATGGTTCAAAATCAACTTTCTTCTCTATGCAAGTTCAAAGATA
TGCTGATCTTTACACCTCNGATTATCTCAATCTCTTAAACTATCCATTATTTTATCATTT
TTGTGCAAAAGTTTACCTCTTCCACANAAAGTTCTTCTTTCTCTTCTTTNATACAAGAAT
TAATAAATAAAGAAAANAAA
Length of connected seq. 1330
Full length Seq ID -
Full length Seq. -
Length of full length seq. -