NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL875
Library SH
(Link to library)
Clone ID SHL875
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHL875P
(Link to Original site)
Representative DNA sequence 
>SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/
AAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAA
TAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXX
XXAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACA
ACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAA
TGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACA
ACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTT
TTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACT
CTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGA
GAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACA
ACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAA
ACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACT
TGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGT
TCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGA
ACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAGAAAATCAACAATTATTAGA
ACAAGAACAAAATCAAAAATAATTTAATCATTNCTTTNCTTTTTAAAAAACTA
sequence update 2002.10.25
Translated Amino Acid sequence 
kiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---IHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQH
LQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQL
NENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKA
QLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEENQQL
LEQEQNQK*fnhxfxf*kt
Translated Amino Acid sequence (All Frames) 
Frame A:
kiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---kfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnkln
iynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynn
lmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkk
lnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*ikkkinn
y*nknkiknnliixxlfkkl

Frame B:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---ns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsst
ftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt
**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c*ks
st*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*iksrrksti
irtrtkskii*sxlxflkn

Frame C:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---IHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQH
LQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQL
NENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKA
QLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEENQQL
LEQEQNQK*fnhxfxf*kt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        729   0.0
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        729   0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        729   0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        729   0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        729   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        729   0.0
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/                        729   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        729   0.0
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/                        729   0.0
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/                        729   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   729   0.0    4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   5e-25  1
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36   0.012  10
CS468836|CS468836.1 Sequence 27 from Patent EP1748080.             42   0.12   6
CS468835|CS468835.1 Sequence 26 from Patent EP1748080.             42   0.12   6
CS419313|CS419313.1 Sequence 27 from Patent WO2006094836.          42   0.12   6
CS419312|CS419312.1 Sequence 26 from Patent WO2006094836.          42   0.12   6
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.41   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.41   1
BQ699661|BQ699661.1 NXRV125_B09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV125_B09 5', mRNA sequence.    48   0.41   1
dna update 2007. 3.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   282   9e-75
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.51
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   0.66
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    37   0.86
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    36   1.5
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   1.9
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   2.5
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.5
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   4.3
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    35   4.3
protein update 2009. 5.31
PSORT 

 psg: 0.55  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SHL875 is nuc
5' end seq. ID SHL875F
5' end seq. 
>SHL875F.Seq
AAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAA
TAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNN
NN
Length of 5' end seq. 122
3' end seq. ID SHL875Z
3' end seq. 
>SHL875Z.Seq
NNNNNNNNNNAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATT
GAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAA
ATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAA
CATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAA
GTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAA
TTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAA
CTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAAT
GTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAA
CAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAA
GCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAG
AATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATT
CAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAGAAAATCAACAA
TTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTNCTTTNCTTTTTAAAAAACT
A
Length of 3' end seq. 781
Connected seq. ID SHL875P
Connected seq. 
>SHL875P.Seq
AAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAA
TAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA--------
--AAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACA
ACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAA
TGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACA
ACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTT
TTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACT
CTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGA
GAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACA
ACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAA
ACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACT
TGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGT
TCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGA
ACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAGAAAATCAACAATTATTAGA
ACAAGAACAAAATCAAAAATAATTTAATCATTNCTTTNCTTTTTAAAAAACTA
Length of connected seq. 883
Full length Seq ID -
Full length Seq. -
Length of full length seq. -