>SLA296 (SLA296Q) /CSM/SL/SLA2-D/SLA296Q.Seq.d/
XXXXXXXXXXCCTGTAACTTTCCCTGATTGGGTAATGTTTATTGTAATTCCGTTCGCTGC
CATTACATTTGGTGTTCAATTAAAAGTTCATTGGAGAGAATTTTGGGTTATCATCATCGC
TAGTTACATTGGTGTAACCGTTGGTAATTGGGGTAGTAAATATTTTGGTGATGTTGGTGC
TTTCTTTGGTTCAGCTGCAATTTGTGCTCTAGGTAACCTTTACTCAAGATTAACAAATAT
TTCTGCGGTCGTTCCAATTATGGCGGGTATTATTTTACTGGTTCCTGGTAGTATGGGTGT
TAAAGGTATCGTTTCAATCAGTGATGGTGATATTTCCGGAGGAATTGATTTCATTGGTGG
TATGTTTATGACTGCTGCAAGTTTAACAATGGGTTTATTGGTTGCAAATTTAATTATTGC
TCCTCCAAAATCGTTCTAAAAAAAATAATAAAAAAAAAAAAATCTCTAACATTTTAAAAT
TTATTCAATTATTTGTTTTAAATTTAATTTAATTATTGCTTCTCCAAAAATCATTCTTAA
AAAAAAAAAAAATAATAATAATAAAAAAAGAATAAAAATAATTTTCTTATCTGCAAAACA
A

---VTFPDWVMFIVIPFAAITFGVQLKVHWREFWVIIIASYIGVTVGNWGSKYFGDVGAF
FGSAAICALGNLYSRLTNISAVVPIMAGIILLVPGSMGVKGIVSISDGDISGGIDFIGGM
FMTAASLTMGLLVANLIIAPPKSF*kk**kkknl*hfkiysiicfkfnliiaspkiilkk
kknnnnkkrikiiflsakq

Frame A:
---l*lslig*cll*frslplhlvfn*kfigenfglssslvtlv*plvigvvnilvmlvl
slvqlqfvl*vtftqd*qiflrsfqlwrvlfywflvvwvlkvsfqsvmvifpeelislvv
cl*llqv*qwvywlqi*llllqnrskknnkkkkisnilkfiqlfvlnli*llllqksflk
kkkiiiikke*k*fsylqn


Frame B:
---cnfp*lgnvycnsvrchyiwcsiksslerilgyhhr*lhwcnrw*lg**ifw*cwcf
lwfscnlcsr*pllkinkyfcgrsnyggyyftgsw*ygc*ryrfnq*w*yfrrn*fhwwy
vydcckfnngfigckfnycsskivlkkiikkkksltf*nlfnylf*i*fnycfsknhs*k
kkk****kknknnflickt


Frame C:
---VTFPDWVMFIVIPFAAITFGVQLKVHWREFWVIIIASYIGVTVGNWGSKYFGDVGAF
FGSAAICALGNLYSRLTNISAVVPIMAGIILLVPGSMGVKGIVSISDGDISGGIDFIGGM
FMTAASLTMGLLVANLIIAPPKSF*kk**kkknl*hfkiysiicfkfnliiaspkiilkk
kknnnnkkrikiiflsakq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB778 (SLB778Q) /CSM/SL/SLB7-D/SLB778Q.Seq.d/                        846   0.0
SLA296 (SLA296Q) /CSM/SL/SLA2-D/SLA296Q.Seq.d/                        846   0.0
SHK748 (SHK748Q) /CSM/SH/SHK7-B/SHK748Q.Seq.d/                        807   0.0
SLC382 (SLC382Q) /CSM/SL/SLC3-D/SLC382Q.Seq.d/                        793   0.0
SHJ621 (SHJ621Q) /CSM/SH/SHJ6-A/SHJ621Q.Seq.d/                        793   0.0
SHH206 (SHH206Q) /CSM/SH/SHH2-A/SHH206Q.Seq.d/                        777   0.0
VHN679 (VHN679Q) /CSM/VH/VHN6-D/VHN679Q.Seq.d/                        773   0.0
CHH435 (CHH435Q) /CSM/CH/CHH4-B/CHH435Q.Seq.d/                        498   e-140
SHL662 (SHL662Q) /CSM/SH/SHL6-C/SHL662Q.Seq.d/                        490   e-137
VHK516 (VHK516Q) /CSM/VH/VHK5-A/VHK516Q.Seq.d/                        444   e-124

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC026418|AC026418.4 Homo sapiens chromosome 5 clone CTD-2100N14, complete sequence.    44   2.2    1
BQ996333|BQ996333.1 QGG12I16.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGG12I16, mRNA sequence.    44   2.2    1
BX248243|BX248243.14 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-225L7.    44   2.2    1
BX890562|BX890562.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-222H17.    36   2.3    3
AL928834|AL928834.14 Zebrafish DNA sequence from clone CH211-51E12 in linkage group 4.    36   6.0    5
BG453292|BG453292.1 NF088F10LF1F1080 Developing leaf Medicago truncatula cDNA clone NF088F10LF 5', mRNA sequence.    42   8.7    1
AC101986|AC101986.3 Mus musculus clone RP24-353K18, WORKING DRAFT SEQUENCE, 10 unordered pieces.    42   8.7    1
AC006885|AC006885.1 Caenorhabditis elegans clone Y59E1, WORKING DRAFT SEQUENCE, 5 unordered pieces.    38   9.0    5
AC146632|AC146632.8 Medicago truncatula clone mth2-57b3, WORKING DRAFT SEQUENCE, 10 ordered pieces.    38   9.1    4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000931_3992(CP000931|pid:none) Shewanella halifaxensis HAW-EB4...    62   1e-08
CP000083_1132(CP000083|pid:none) Colwellia psychrerythraea 34H, ...    61   3e-08
CP000472_2031(CP000472|pid:none) Shewanella piezotolerans WP3, c...    60   6e-08
AE014299_306(AE014299|pid:none) Shewanella oneidensis MR-1, comp...    59   1e-07
CP000444_272(CP000444|pid:none) Shewanella sp. MR-7, complete ge...    59   1e-07
CP000563_4021(CP000563|pid:none) Shewanella baltica OS155, compl...    57   4e-07
CP000503_3778(CP000503|pid:none) Shewanella sp. W3-18-1, complet...    56   8e-07
AM039952_3694(AM039952|pid:none) Xanthomonas campestris pv. vesi...    53   5e-06
CP000606_230(CP000606|pid:none) Shewanella loihica PV-4, complet...    52   2e-05
AM920689_3757(AM920689|pid:none) Xanthomonas campestris pv. camp...    52   2e-05

 psg: 0.75  gvh: 0.55  alm: 0.25  top: 0.63  tms: 0.27  mit: 0.25  mip: 0.12
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 12.0 %: nuclear
	 12.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SLA296 is end

>SLA296Z.Seq
----------CCTGTAACTTTCCCTGATTGGGTAATGTTTATTGTAATTCCGTTCGCTGC
CATTACATTTGGTGTTCAATTAAAAGTTCATTGGAGAGAATTTTGGGTTATCATCATCGC
TAGTTACATTGGTGTAACCGTTGGTAATTGGGGTAGTAAATATTTTGGTGATGTTGGTGC
TTTCTTTGGTTCAGCTGCAATTTGTGCTCTAGGTAACCTTTACTCAAGATTAACAAATAT
TTCTGCGGTCGTTCCAATTATGGCGGGTATTATTTTACTGGTTCCTGGTAGTATGGGTGT
TAAAGGTATCGTTTCAATCAGTGATGGTGATATTTCCGGAGGAATTGATTTCATTGGTGG
TATGTTTATGACTGCTGCAAGTTTAACAATGGGTTTATTGGTTGCAAATTTAATTATTGC
TCCTCCAAAATCGTTCTAAAAAAAATAATAAAAAAAAAAAAATCTCTAACATTTTAAAAT
TTATTCAATTATTTGTTTTAAATTTAATTTAATTATTGCTTCTCCAAAAATCATTCTTAA
AAAAAAAAAAAATAATAATAATAAAAAAAGAATAAAAATAATTTTCTTATCTGCAAAACA
A