SLA432
Library SL
(Link to library)
Clone ID SLA432
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID SLA432F
(Link to Original site)
Representative DNA sequence
>SLA432 (SLA432Q) /CSM/SL/SLA4-B/SLA432Q.Seq.d/
AAAAGGAATCAAATAATTATATATATATATAAAAATATAAAAAAAAATAAAATGAGAATT
TTATATTTAGCTTCTCTTTTATTTTTAATTACATTATATCTATCACCAACTTTTGGTTGG
GGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAATATACATGTAAATCAGATAGAAGT
TGTGCATATTTACCATTTGTATCATGTTGTGGTAAGAAAGAATTTTTCTGTGTTAATCGT
GATCATAGAAATTGTTGTGATGATTTATCATGTGCTAAAAACACGAGAACTGGTGAAATC
TTTGAGATTTGGTCAAGTTGTAAACCACATAGAGATTTTGTACCATATCATTCACCAAAT
ACAACCACATGTGAATCATTAGGTTGTGAAGCAAGAGGTATGGAATGTGAATGGGTTGAA
TCATCACCATGTTATGGAACTTCTTGTTGCCCAAGAATTCCAAGATGTGTTGGTCATCAT
GGTGGCGGTCATAAATGTGACAGAATGAGATGTCCAGAAGGATTCTATTGTGAAGAACAA
GGTGGTAGTGCATGCTGCGTACCACATCATGACGGTTGTGGTAATATTCAATGTCCATGG
GGCCACTATTGTGTCAATGAACATGGTAAATGCAGATGTGTACCACACAGACCACCACCA
CGTCCACCAGTTGACCAATGCCGTAATCAACATTGTCCACATGGXXXXXXXXXX
sequence update 1999. 2.19
Translated Amino Acid sequence
KRNQIIIYIYKNIKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSEYTCKSDRS
CAYLPFVSCCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRDFVPYHSPN
TTTCESLGCEARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCPEGFYCEEQ
GGSACCVPHHDGCGNIQCPWGHYCVNEHGKCRCVPHRPPPRPPVDQCRNQHCPH---


Translated Amino Acid sequence (All Frames)
Frame A:
KRNQIIIYIYKNIKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSEYTCKSDRS
CAYLPFVSCCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRDFVPYHSPN
TTTCESLGCEARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCPEGFYCEEQ
GGSACCVPHHDGCGNIQCPWGHYCVNEHGKCRCVPHRPPPRPPVDQCRNQHCPH---


Frame B:
kgik*lyiyiki*kkik*efyi*llfyf*lhyiyhqllvgvvaeivkvivqnihvnqiev
vhiyhlyhvvvrknfsvliviieivvmiyhvlktrelvkslrfgqvvnhieilyhiihqi
qphvnh*vvkqevwnvnglnhhhvmellvaqefqdvlvimvavinvte*dvqkdsivknk
vvvhaayhimtvvvifnvhgativsmnmvnadvyhtdhhhvhqltnavinivhm---


Frame C:
kesnnyiyi*kykkk*nenfifsfsfifnyiisitnfwlgwwqrl*kssfriym*ir*kl
cifticimlw*eriflc*s*s*kll**fimc*khenw*nl*dlvkl*tt*rfctisftky
nhm*iirl*skrygm*mg*iitmlwnfllpknskmcwsswwrs*m*qnemsrrill*rtr
w*cmlrtts*rlw*ysmsmgpllcq*tw*mqmcttqttttsts*pmp*stlst---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLA432 (SLA432Q) /CSM/SL/SLA4-B/SLA432Q.Seq.d/ 1302 0.0
SLA402 (SLA402Q) /CSM/SL/SLA4-A/SLA402Q.Seq.d/ 1302 0.0
SLB120 (SLB120Q) /CSM/SL/SLB1-A/SLB120Q.Seq.d/ 1292 0.0
SLB538 (SLB538Q) /CSM/SL/SLB5-B/SLB538Q.Seq.d/ 1281 0.0
CFF741 (CFF741Q) /CSM/CF/CFF7-B/CFF741Q.Seq.d/ 1263 0.0
SFI766 (SFI766Q) /CSM/SF/SFI7-C/SFI766Q.Seq.d/ 1227 0.0
SFI591 (SFI591Q) /CSM/SF/SFI5-D/SFI591Q.Seq.d/ 1225 0.0
CFF770 (CFF770Q) /CSM/CF/CFF7-C/CFF770Q.Seq.d/ 1225 0.0
SLA438 (SLA438Q) /CSM/SL/SLA4-B/SLA438Q.Seq.d/ 1219 0.0
SFI834 (SFI834Q) /CSM/SF/SFI8-B/SFI834Q.Seq.d/ 1213 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU060147) Dictyostelium discoideum slug cDNA, clone SLA432. 1289 0.0 1
(AU060137) Dictyostelium discoideum slug cDNA, clone SLA402. 1289 0.0 1
(AU060689) Dictyostelium discoideum slug cDNA, clone SLB120. 1281 0.0 1
(AU060802) Dictyostelium discoideum slug cDNA, clone SLB538. 1271 0.0 1
(BJ358978) Dictyostelium discoideum cDNA clone:ddc12b11, 5' ... 1259 0.0 1
(BJ389379) Dictyostelium discoideum cDNA clone:dds18d17, 5' ... 1217 0.0 1
(BJ389449) Dictyostelium discoideum cDNA clone:dds18e23, 5' ... 1215 0.0 1
(BJ359066) Dictyostelium discoideum cDNA clone:ddc12l17, 5' ... 1215 0.0 1
(AU060149) Dictyostelium discoideum slug cDNA, clone SLA438. 1209 0.0 1
(BJ389303) Dictyostelium discoideum cDNA clone:dds18d10, 5' ... 1209 0.0 1
dna update 2009. 1.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 473 e-132
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 470 e-131
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 158 2e-37
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 107 3e-22
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 75 2e-12
AC117076_49(AC117076|pid:none) Dictyostelium discoideum chromoso... 70 8e-11
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 68 2e-10
AC117076_50(AC117076|pid:none) Dictyostelium discoideum chromoso... 67 4e-10
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 67 5e-10
B25439(B25439)Beejin protein - slime mold (Dictyostelium discoid... 62 2e-08
protein update 2009. 5.31
PSORT

psg: 0.32 gvh: 0.77 alm: 0.29 top: 0.17 tms: 0.07 mit: 0.35 mip: 0.04
nuc: 0.06 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.50 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: Golgi
24.0 %: mitochondrial
24.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: vacuolar
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for SLA432 is gol

5' end seq. ID SLA432F
5' end seq.
>SLA432F.Seq
AAAAGGAATCAAATAATTATATATATATATAAAAATATAAAAAAAAATAAAATGAGAATT
TTATATTTAGCTTCTCTTTTATTTTTAATTACATTATATCTATCACCAACTTTTGGTTGG
GGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAATATACATGTAAATCAGATAGAAGT
TGTGCATATTTACCATTTGTATCATGTTGTGGTAAGAAAGAATTTTTCTGTGTTAATCGT
GATCATAGAAATTGTTGTGATGATTTATCATGTGCTAAAAACACGAGAACTGGTGAAATC
TTTGAGATTTGGTCAAGTTGTAAACCACATAGAGATTTTGTACCATATCATTCACCAAAT
ACAACCACATGTGAATCATTAGGTTGTGAAGCAAGAGGTATGGAATGTGAATGGGTTGAA
TCATCACCATGTTATGGAACTTCTTGTTGCCCAAGAATTCCAAGATGTGTTGGTCATCAT
GGTGGCGGTCATAAATGTGACAGAATGAGATGTCCAGAAGGATTCTATTGTGAAGAACAA
GGTGGTAGTGCATGCTGCGTACCACATCATGACGGTTGTGGTAATATTCAATGTCCATGG
GGCCACTATTGTGTCAATGAACATGGTAAATGCAGATGTGTACCACACAGACCACCACCA
CGTCCACCAGTTGACCAATGCCGTAATCAACATTGTCCACATGG----------
Length of 5' end seq. 704
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -