NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLA748
Library SL
(Link to library)
Clone ID SLA748
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16307-1
Original site URL
Representative seq. ID SLA748P
(Link to Original site)
Representative DNA sequence 
>SLA748 (SLA748Q) /CSM/SL/SLA7-B/SLA748Q.Seq.d/
GCTTGCACCATCATTATTTACATTTAATGGACGAATTTCATTTGCATCCAATCACAACAA
CTGGTACTGCCACTGTTACTCCAGGTTCCACAACAAGTAGTACAAATGGTGAGCAATGCG
AAGATGGTGATACATTCGTAAGCAAACTATCTTTACATGCCGCCAAAAGATCTGCTGGTG
CAACTTGTCAAGCCATTGATAACGTTATGAAAGGTAATGTAACAAGTGCTTTTGTTGCCG
CTCGCCCACCTGGTCATCATGCTGGTAGAGATGGTTTAACTAGTGGTACTAGTTCTCAAG
GATTTTGTCTATTGAATCATGTTTGTATTGGTGCTAAATACGCTCAACTCAAGTATAATT
TAGATAAAATTGCAATCATTGATTTCGATGTTCATCATGGAAATGGTACCGAAGAAATAT
TATCAAATGATCAAGGTTTCTATTTCCTTAGTATTCATATGTTTGAAGAAGGTTTCTATC
CTGGTAGTGGTGGTGGTGTTGGTTCAATTGGTGTAGTTAATTTAAATGAATTTAATGAAC
AAAACGATTATGATGATGATGATAATAATAATGATGTAAATAATAATAATAATAATAATA
ATXXXXXXXXXXGGATCATTTGGCTTCTTTATGTTTATTGGAAGAAAACTATGTCGAAAT
TACAAGATCCCTACGTAGAGTTGCCGATCGTTGGTGTAAAGGTAGATTGGTTTCAATATT
AGAAGGTGGTTATAATATAAATGCCTTAAGACAATGTACAATTGCTCATTTATCTGCATT
AAGCGAAGACGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGAAACTTTAAAAA
AAAAAACAAAGAAAAAAACTCCAAAACCAACAGATTTATATATATAAAACAAAACAGAAT
TTAAATAAAAAAAAAAAAATGATTTTAAGAAAATAAGTGATTTATTAAATTTTTTTAATT
CCAGATTTCATTTCACAAAAAAA
sequence update 1999. 2.19
Translated Amino Acid sequence 
LHHHYLHLMDEFHLHPITTTGTATVTPGSTTSSTNGEQCEDGDTFVSKLSLHAAKRSAGA
TCQAIDNVMKGNVTSAFVAARPPGHHAGRDGLTSGTSSQGFCLLNHVCIGAKYAQLKYNL
DKIAIIDFDVHHGNGTEEILSNDQGFYFLSIHMFEEGFYPGSGGGVGSIGVVNLNEFNEQ
NDYDDDDNNNDVNNNNNNNN---

---DHLASLCLLEENYVEITRSLRRVADRWCKGRLVSILEGGYNINALRQCTIAHLSALS
EDD*kkkkkkkkkn*nfkkknkeknsktnrfiyikqnri*ikkkk*f*enk*fikff*fq
isfhkk
Translated Amino Acid sequence (All Frames) 
Frame A:
actiiiyi*wtnficiqsqqlvlplllqvpqqvvqmvsnakmvihs*anylymppkdllv
qlvkplitl*kvm*qvlllplahlvimlvemv*lvvlvlkdfvy*imfvlvlntlnssii
*iklqslismfimemvpkkyyqmikvsislvficlkkvsilvvvvvlvqlv*li*mnlmn
ktimmmmiiimm*iiiiiii---

---gsfgffmfigrklcrnykipt*scrslv*r*igfnirrwl*ykclktmyncsficik
rrrlkkkkkkkkkklkl*kkkqrkklqnqqiyiyktkqnlnkkkkmilrk*viy*iflip
dfisqk

Frame B:
lapslftfngrisfasnhnnwychcysrfhnk*ykw*amrrw*yirkqtiftcrqkicwc
nlssh**ryer*cnkcfccrsptwsscw*rwfn*wy*fsrilsiesclywc*irstqv*f
r*ncnh*frcsswkwyrrniik*srflfp*ysyv*rrflsw*wwwcwfnwcs*fk*i**t
krl********ck*******---

---DHLASLCLLEENYVEITRSLRRVADRWCKGRLVSILEGGYNINALRQCTIAHLSALS
EDD*kkkkkkkkkn*nfkkknkeknsktnrfiyikqnri*ikkkk*f*enk*fikff*fq
isfhkk

Frame C:
LHHHYLHLMDEFHLHPITTTGTATVTPGSTTSSTNGEQCEDGDTFVSKLSLHAAKRSAGA
TCQAIDNVMKGNVTSAFVAARPPGHHAGRDGLTSGTSSQGFCLLNHVCIGAKYAQLKYNL
DKIAIIDFDVHHGNGTEEILSNDQGFYFLSIHMFEEGFYPGSGGGVGSIGVVNLNEFNEQ
NDYDDDDNNNDVNNNNNNNN---

---iiwllyvywkktmsklqdpyvelpivgvkvdwfqy*kvvii*mp*dnvqlliylh*a
ktikkkkkkkkkktetlkkktkkktpkptdlyi*nktefk*kkkndfkkisdllnffnsr
fhftkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA748 (SLA748Q) /CSM/SL/SLA7-B/SLA748Q.Seq.d/                       1112   0.0
SSB830 (SSB830Q) /CSM/SS/SSB8-B/SSB830Q.Seq.d/                       1021   0.0
SSD176 (SSD176Q) /CSM/SS/SSD1-D/SSD176Q.Seq.d/                        809   0.0
SLK522 (SLK522Q) /CSM/SL/SLK5-A/SLK522Q.Seq.d/                        361   1e-98
SLF856 (SLF856Q) /CSM/SL/SLF8-C/SLF856Q.Seq.d/                        361   1e-98
SLF589 (SLF589Q) /CSM/SL/SLF5-D/SLF589Q.Seq.d/                        361   1e-98
SSD732 (SSD732Q) /CSM/SS/SSD7-B/SSD732Q.Seq.d/                        353   3e-96
SSE893 (SSE893Q) /CSM/SS/SSE8-D/SSE893Q.Seq.d/                        307   2e-82
SSB305 (SSB305Q) /CSM/SS/SSB3-A/SSB305Q.Seq.d/                        281   1e-74
VHE361 (VHE361Q) /CSM/VH/VHE3-C/VHE361Q.Seq.d/                         44   0.004
own update 2002.12.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060257) Dictyostelium discoideum slug cDNA, clone SLA748.     1023   0.0    1
(AU052291) Dictyostelium discoideum slug cDNA, clone SLA748.      357   e-109  3
(AU037513) Dictyostelium discoideum slug cDNA, clone SSD732.      349   e-106  3
(AU054058) Dictyostelium discoideum slug cDNA, clone SLK522.      357   5e-94  1
(AU053166) Dictyostelium discoideum slug cDNA, clone SLF856.      357   5e-94  1
(AU053054) Dictyostelium discoideum slug cDNA, clone SLF589.      357   5e-94  1
(AU036929) Dictyostelium discoideum slug cDNA, clone SSB830.      357   5e-94  1
(C92419) Dictyostelium discoideum slug cDNA, clone SSE893.        303   7e-78  1
(C84209) Dictyostelium discoideum slug cDNA, clone SSB305.        281   2e-71  1
(AU071583) Dictyostelium discoideum slug cDNA, clone SSB830.      202   2e-47  1
dna update 2009. 1.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54X15) RecName: Full=Type-2 histone deacetylase 1;          EC...   271   2e-71
CP000872_411(CP000872|pid:none) Brucella canis ATCC 23365 chromo...   117   4e-25
AB3440(AB3440) acetylspermidine deacetylase (EC 3.5.1.48) [impor...   117   4e-25
AE017223_424(AE017223|pid:none) Brucella abortus biovar 1 str. 9...   116   1e-24
CP000758_540(CP000758|pid:none) Ochrobactrum anthropi ATCC 49188...   116   1e-24
CR954246_321(CR954246|pid:none) Pseudoalteromonas haloplanktis s...   114   4e-24
CP000316_3092(CP000316|pid:none) Polaromonas sp. JS666, complete...   113   8e-24
CP000655_508(CP000655|pid:none) Polynucleobacter necessarius sub...   113   1e-23
CP000479_3212(CP000479|pid:none) Mycobacterium avium 104, comple...   113   1e-23
CP000480_164(CP000480|pid:none) Mycobacterium smegmatis str. MC2...   112   1e-23
protein update 2009. 5.31
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SLA748 is cyt
5' end seq. ID SLA748F
5' end seq. 
>SLA748F.Seq
GCTTGCACCATCATTATTTACATTTAATGGACGAATTTCATTTGCATCCAATCACAACAA
CTGGTACTGCCACTGTTACTCCAGGTTCCACAACAAGTAGTACAAATGGTGAGCAATGCG
AAGATGGTGATACATTCGTAAGCAAACTATCTTTACATGCCGCCAAAAGATCTGCTGGTG
CAACTTGTCAAGCCATTGATAACGTTATGAAAGGTAATGTAACAAGTGCTTTTGTTGCCG
CTCGCCCACCTGGTCATCATGCTGGTAGAGATGGTTTAACTAGTGGTACTAGTTCTCAAG
GATTTTGTCTATTGAATCATGTTTGTATTGGTGCTAAATACGCTCAACTCAAGTATAATT
TAGATAAAATTGCAATCATTGATTTCGATGTTCATCATGGAAATGGTACCGAAGAAATAT
TATCAAATGATCAAGGTTTCTATTTCCTTAGTATTCATATGTTTGAAGAAGGTTTCTATC
CTGGTAGTGGTGGTGGTGTTGGTTCAATTGGTGTAGTTAATTTAAATGAATTTAATGAAC
AAAACGATTATGATGATGATGATAATAATAATGATGTAAATAATAATAATAATAATAATA
AT----------
Length of 5' end seq. 602
3' end seq. ID SLA748Z
3' end seq. 
>SLA748Z.Seq
----------GGATCATTTGGCTTCTTTATGTTTATTGGAAGAAAACTATGTCGAAATTA
CAAGATCCCTACGTAGAGTTGCCGATCGTTGGTGTAAAGGTAGATTGGTTTCAATATTAG
AAGGTGGTTATAATATAAATGCCTTAAGACAATGTACAATTGCTCATTTATCTGCATTAA
GCGAAGACGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGAAACTTTAAAAAAA
AAAACAAAGAAAAAAACTCCAAAACCAACAGATTTATATATATAAAACAAAACAGAATTT
AAATAAAAAAAAAAAAATGATTTTAAGAAAATAAGTGATTTATTAAATTTTTTTAATTCC
AGATTTCATTTCACAAAAAAA
Length of 3' end seq. 371
Connected seq. ID SLA748P
Connected seq. 
>SLA748P.Seq
GCTTGCACCATCATTATTTACATTTAATGGACGAATTTCATTTGCATCCAATCACAACAA
CTGGTACTGCCACTGTTACTCCAGGTTCCACAACAAGTAGTACAAATGGTGAGCAATGCG
AAGATGGTGATACATTCGTAAGCAAACTATCTTTACATGCCGCCAAAAGATCTGCTGGTG
CAACTTGTCAAGCCATTGATAACGTTATGAAAGGTAATGTAACAAGTGCTTTTGTTGCCG
CTCGCCCACCTGGTCATCATGCTGGTAGAGATGGTTTAACTAGTGGTACTAGTTCTCAAG
GATTTTGTCTATTGAATCATGTTTGTATTGGTGCTAAATACGCTCAACTCAAGTATAATT
TAGATAAAATTGCAATCATTGATTTCGATGTTCATCATGGAAATGGTACCGAAGAAATAT
TATCAAATGATCAAGGTTTCTATTTCCTTAGTATTCATATGTTTGAAGAAGGTTTCTATC
CTGGTAGTGGTGGTGGTGTTGGTTCAATTGGTGTAGTTAATTTAAATGAATTTAATGAAC
AAAACGATTATGATGATGATGATAATAATAATGATGTAAATAATAATAATAATAATAATA
AT----------GGATCATTTGGCTTCTTTATGTTTATTGGAAGAAAACTATGTCGAAAT
TACAAGATCCCTACGTAGAGTTGCCGATCGTTGGTGTAAAGGTAGATTGGTTTCAATATT
AGAAGGTGGTTATAATATAAATGCCTTAAGACAATGTACAATTGCTCATTTATCTGCATT
AAGCGAAGACGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGAAACTTTAAAAA
AAAAAACAAAGAAAAAAACTCCAAAACCAACAGATTTATATATATAAAACAAAACAGAAT
TTAAATAAAAAAAAAAAAATGATTTTAAGAAAATAAGTGATTTATTAAATTTTTTTAATT
CCAGATTTCATTTCACAAAAAAA
Length of connected seq. 973
Full length Seq ID -
Full length Seq. -
Length of full length seq. -