SLB710
Library SL
(Link to library)
Clone ID SLB710
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16343-1
Original site URL
Representative seq. ID SLB710E
(Link to Original site)
Representative DNA sequence
>SLB710 (SLB710Q) /CSM/SL/SLB7-A/SLB710Q.Seq.d/
CAACGTGAAGTAGGTACTGGTTACTTTGATGTCTAGTTGCAGTATAGCCTTCAGATTCTA
AAGAGAATTCTTTCTCTTGAAGATTTACATAGGCAGTCATAGCATTCTTTTTGTAATCCT
TTGCCAATTCAAACATTGTTAAATTGAGAGCATGGAAACCAAAAGAATGCTATGACTGCC
TATGTAAATCTTCAAGAGAAAGAATTCTCTTTAGAATCTGAAGGCTATACTGCAACTAGA
CATCAACGTGAAGTAGGTACTGGTTACTTTGATCAAGTTTCTCAAATTATCTCTGGTGGT
CAATCTTCAACATTAGCTTTAGTAGGTTCAACTGAAGAAGAACAATTTGATGAACATATT
GAAAAGAAAAAGAAAGTTGCTCATAATAATAATGGAAATAATAAAAACAAAGCTGCAAGT
GTTCAAAACTAATTAATTTTTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 4.15
Translated Amino Acid sequence
qrevgtgyfdv*lqyslqilkrilsledlhrqs*hsfcnplpiqtlln*EHGNQKNAMTA
YVNLQEKEFSLESEGYTATRHQREVGTGYFDQVSQIISGGQSSTLALVGSTEEEQFDEHI
EKKKKVAHNNNGNNKNKAASVQN*lifilkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
qrevgtgyfdv*lqyslqilkrilsledlhrqs*hsfcnplpiqtlln*EHGNQKNAMTA
YVNLQEKEFSLESEGYTATRHQREVGTGYFDQVSQIISGGQSSTLALVGSTEEEQFDEHI
EKKKKVAHNNNGNNKNKAASVQN*lifilkkkkkkkk


Frame B:
nvk*vlvtlmsscsiafrf*reffllkiyigshsilfvilcqfkhc*iesmetkrml*lp
m*ifkrknsl*nlkailqldinvk*vlvtlikflklslvvnlqh*l**vqlkknnlmnil
krkrklliiimeiiktklqvfktn*flf*kkkkkkkk


Frame C:
t*srywll*clvav*psdskensfs*rft*aviaffl*sfansnivklrawkpkecydcl
ckssrerilfri*rlycn*tst*srywll*ssfsnylwwsifnisfsrfn*rrti**ty*
kekescs***wk**kqsckcsklinfyfkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLB710 (SLB710Q) /CSM/SL/SLB7-A/SLB710Q.Seq.d/ 884 0.0
SSM553 (SSM553Q) /CSM/SS/SSM5-C/SSM553Q.Seq.d/ 567 e-161
SSH629 (SSH629Q) /CSM/SS/SSH6-B/SSH629Q.Seq.d/ 567 e-161
SSC894 (SSC894Q) /CSM/SS/SSC8-D/SSC894Q.Seq.d/ 567 e-161
SSA318 (SSA318Q) /CSM/SS/SSA3-A/SSA318Q.Seq.d/ 567 e-161
SLK824 (SLK824Q) /CSM/SL/SLK8-A/SLK824Q.Seq.d/ 567 e-161
SLI615 (SLI615Q) /CSM/SL/SLI6-A/SLI615Q.Seq.d/ 567 e-161
SLI231 (SLI231Q) /CSM/SL/SLI2-B/SLI231Q.Seq.d/ 567 e-161
SLH242 (SLH242Q) /CSM/SL/SLH2-B/SLH242Q.Seq.d/ 567 e-161
SLG842 (SLG842Q) /CSM/SL/SLG8-B/SLG842Q.Seq.d/ 567 e-161

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU033996) Dictyostelium discoideum slug cDNA, clone SLB710. 884 0.0 1
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 567 e-157 1
(AU054151) Dictyostelium discoideum slug cDNA, clone SLK824. 567 e-157 1
(AU053419) Dictyostelium discoideum slug cDNA, clone SLI615. 567 e-157 1
(AU053250) Dictyostelium discoideum slug cDNA, clone SLI231. 567 e-157 1
(AU052899) Dictyostelium discoideum slug cDNA, clone SLF289. 567 e-157 1
(AU039960) Dictyostelium discoideum slug cDNA, clone SLG842. 567 e-157 1
(AU039705) Dictyostelium discoideum slug cDNA, clone SLG223. 567 e-157 1
(AU039240) Dictyostelium discoideum slug cDNA, clone SLH242. 567 e-157 1
(AU038372) Dictyostelium discoideum slug cDNA, clone SSH629. 567 e-157 1
dna update 2009. 2.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117076_17(AC117076|pid:none) Dictyostelium discoideum chromoso... 114 1e-24
AP006840_590(AP006840|pid:none) Symbiobacterium thermophilum IAM... 88 1e-16
CP000454_581(CP000454|pid:none) Arthrobacter sp. FB24, complete ... 82 6e-15
CP000804_4260(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 82 8e-15
CP001341_705(CP001341|pid:none) Arthrobacter chlorophenolicus A6... 81 1e-14
CP000922_2214(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 79 5e-14
BA000043_676(BA000043|pid:none) Geobacillus kaustophilus HTA426 ... 78 1e-13
CP000557_578(CP000557|pid:none) Geobacillus thermodenitrificans ... 77 2e-13
CP000088_1375(CP000088|pid:none) Thermobifida fusca YX, complete... 77 3e-13
BA000028_2404(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 77 3e-13
protein update 2009. 7. 4
PSORT

psg: 0.83 gvh: 0.44 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SLB710 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLB710E
Full length Seq.
>SLB710E.Seq
CAACGTGAAGTAGGTACTGGTTACTTTGATGTCTAGTTGCAGTATAGCCTTCAGATTCTA
AAGAGAATTCTTTCTCTTGAAGATTTACATAGGCAGTCATAGCATTCTTTTTGTAATCCT
TTGCCAATTCAAACATTGTTAAATTGAGAGCATGGAAACCAAAAGAATGCTATGACTGCC
TATGTAAATCTTCAAGAGAAAGAATTCTCTTTAGAATCTGAAGGCTATACTGCAACTAGA
CATCAACGTGAAGTAGGTACTGGTTACTTTGATCAAGTTTCTCAAATTATCTCTGGTGGT
CAATCTTCAACATTAGCTTTAGTAGGTTCAACTGAAGAAGAACAATTTGATGAACATATT
GAAAAGAAAAAGAAAGTTGCTCATAATAATAATGGAAATAATAAAAACAAAGCTGCAAGT
GTTCAAAACTAATTAATTTTTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 473