>SLB734 (SLB734Q) /CSM/SL/SLB7-B/SLB734Q.Seq.d/
XXXXXXXXXXTTAAGTAATAATTTAAACCTNTTAGCTAATAGTGGTAATAATGTAAATAC
AAATCAAANCCAACAACAACAACAACAACAACAATCTTTACCAAATTCAACATCAAAATC
TGATAATTTAAATAATAGTGGTTCAAATAGTTTAACTTCAAGTAATGAAAATGTTTCAGT
AAATGAAAACACTTCAAAAGCCAATTAACCAATTAATTTAATTTTAAAATAAAAAAAATA
AAAAAAAAACAAATAAAAAAAAAACAAATAA

---SNNLNLLANSGNNVNTNQXQQQQQQQQSLPNSTSKSDNLNNSGSNSLTSSNENVSVN
ENTSKAN*pinlilk*kk*kknk*kknk*

Frame A:
---*vii*tx*livvim*iqikxnnnnnnnnlyqiqhqnlii*iivvqiv*lqvmkmfq*
mktlqkpinqli*f*nkknkkktnkkktn


Frame B:
---k**fkpxs**w**ckyksxptttttttiftkfniki**fk**wfk*fnfk**kcfsk
*khfksqltn*fnfkikkikkkqikkkqi


Frame C:
---SNNLNLLANSGNNVNTNQXQQQQQQQQSLPNSTSKSDNLNNSGSNSLTSSNENVSVN
ENTSKAN*pinlilk*kk*kknk*kknk*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK343 (SSK343Q) /CSM/SS/SSK3-B/SSK343Q.Seq.d/                        260   1e-68
SLB734 (SLB734Q) /CSM/SL/SLB7-B/SLB734Q.Seq.d/                        260   1e-68
CFG449 (CFG449Q) /CSM/CF/CFG4-C/CFG449Q.Seq.d/                        105   3e-22
AFC531 (AFC531Q) /CSM/AF/AFC5-B/AFC531Q.Seq.d/                        105   3e-22
SHD588 (SHD588Q) /CSM/SH/SHD5-D/SHD588Q.Seq.d/                         42   0.004
SFL454 (SFL454Q) /CSM/SF/SFL4-C/SFL454Q.Seq.d/                         42   0.004
SFE788 (SFE788Q) /CSM/SF/SFE7-D/SFE788Q.Seq.d/                         42   0.004
CHG376 (CHG376Q) /CSM/CH/CHG3-D/CHG376Q.Seq.d/                         42   0.004
SSH130 (SSH130Q) /CSM/SS/SSH1-B/SSH130Q.Seq.d/                         40   0.017
SSL261 (SSL261Q) /CSM/SS/SSL2-C/SSL261Q.Seq.d/                         38   0.065

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034093) Dictyostelium discoideum slug cDNA, clone SLB734.      260   6e-92  2
(C91490) Dictyostelium discoideum slug cDNA, clone SSK343.        260   9e-91  2
(BJ372638) Dictyostelium discoideum cDNA clone:ddc13b14, 3' ...   105   8e-24  2
(BJ341382) Dictyostelium discoideum cDNA clone:dda6m07, 3' e...   105   8e-19  1
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   0.40   5
(AE002114) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    36   0.59   2
(DQ812521) Spironucleus barkhanus isolate Sp4 genomic sequence.    32   0.63   4
(FP016172) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.64   1
(FP015891) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.64   1
(CU607022) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.64   1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 95,171,108

 psg: 0.77  gvh: 0.43  alm: 0.72  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 20.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SLB734 is nuc

>SLB734Z.Seq
----------TTAAGTAATAATTTAAACCTNTTAGCTAATAGTGGTAATAATGTAAATAC
AAATCAAANCCAACAACAACAACAACAACAACAATCTTTACCAAATTCAACATCAAAATC
TGATAATTTAAATAATAGTGGTTCAAATAGTTTAACTTCAAGTAATGAAAATGTTTCAGT
AAATGAAAACACTTCAAAAGCCAATTAACCAATTAATTTAATTTTAAAATAAAAAAAATA
AAAAAAAAACAAATAAAAAAAAAACAAATAA