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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB783
Library SL
(Link to library)
Clone ID SLB783
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U03877-1
Original site URL
Representative seq. ID SLB783E
(Link to Original site)
Representative DNA sequence 
>SLB783 (SLB783Q) /CSM/SL/SLB7-D/SLB783Q.Seq.d/
AGACAATAATACCTCCAAATAATGTTCAGCAACAACAACCACAACAAACTGAAAAACCAA
GTATTTATCAAGTATTTGGACAACAGATTGATCAAGGTTTACCAAATGGTTGGGAAGTTC
GTCAAGATCAATTTGGTAGAGTATTTTATGTTGATCATATCAATCGTGCCACTACTTGGA
CTCGTCCAACTGTAAAACATCCAAAACAACACCAACAGGCTACACTTGTACAA
sequence update 1998. 4.15
Translated Amino Acid sequence 
TIIPPNNVQQQQPQQTEKPSIYQVFGQQIDQGLPNGWEVRQDQFGRVFYVDHINRATTWT
RPTVKHPKQHQQATLVQ
Translated Amino Acid sequence (All Frames) 
Frame A:
rq*ylqimfsnnnhnklknqvfikyldnrlikvyqmvgkfvkinlveyfmliisivpllg
lvql*niqnntnrlhly


Frame B:
dnntsk*csatttttn*ktkylssiwttd*srftkwlgsssrsiw*silc*syqschyld
ssncktskttptgytct


Frame C:
TIIPPNNVQQQQPQQTEKPSIYQVFGQQIDQGLPNGWEVRQDQFGRVFYVDHINRATTWT
RPTVKHPKQHQQATLVQ
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB783 (SLB783Q) /CSM/SL/SLB7-D/SLB783Q.Seq.d/                        462   e-129
VFA732 (VFA732Q) /CSM/VF/VFA7-B/VFA732Q.Seq.d/                         46   2e-04
AFI763 (AFI763Q) /CSM/AF/AFI7-C/AFI763Q.Seq.d/                         44   0.001
VFK432 (VFK432Q) /CSM/VF/VFK4-B/VFK432Q.Seq.d/                         42   0.004
SSF716 (SSF716Q) /CSM/SS/SSF7-A/SSF716Q.Seq.d/                         42   0.004
SLG573 (SLG573Q) /CSM/SL/SLG5-D/SLG573Q.Seq.d/                         42   0.004
SLB863 (SLB863Q) /CSM/SL/SLB8-C/SLB863Q.Seq.d/                         42   0.004
SLB260 (SLB260Q) /CSM/SL/SLB2-C/SLB260Q.Seq.d/                         42   0.004
SHE630 (SHE630Q) /CSM/SH/SHE6-B/SHE630Q.Seq.d/                         42   0.004
CHR503 (CHR503Q) /CSM/CH/CHR5-A/CHR503Q.Seq.d/                         42   0.004
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AB089315) Dictyostelium discoideum dwwa mRNA for DWWA, part...   462   e-126  1
(AU034135) Dictyostelium discoideum slug cDNA, clone SLB783.      462   e-126  1
(AF451898) Heliothis zea virus 1, complete genome.                 40   0.14   5
(BX649381) Mouse DNA sequence from clone RP23-245K23 on chro...    48   0.14   1
(BX897724) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    48   0.14   1
(CR097226) Reverse strand read from insert in 3'HPRT inserti...    48   0.14   1
(AC189019) Gallus gallus BAC clone CH261-146J12 from chromos...    40   0.30   2
(BH292487) CH230-44D8.TV CHORI-230 Segment 1 Rattus norvegic...    40   0.39   2
(EB495724) 1099435198110 12-DrosW-norm-1P5Kb Drosophila will...    34   0.49   2
(AL807832) Mouse DNA sequence from clone RP23-198D21 on chro...    46   0.54   1
dna update 2009. 2.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB089315_1(AB089315|pid:none) Dictyostelium discoideum dwwa mRNA...   136   3e-31
AB037722_1(AB037722|pid:none) Homo sapiens mRNA for KIAA1301 pro...    61   1e-08
AX405971_1(AX405971|pid:none) Sequence 386 from Patent WO0222660.      61   1e-08
CR749424_1(CR749424|pid:none) Homo sapiens mRNA; cDNA DKFZp686M1...    61   1e-08
(Q9P2P5) RecName: Full=E3 ubiquitin-protein ligase HECW2;       ...    61   1e-08
BX005176_4(BX005176|pid:none) Zebrafish DNA sequence from clone ...    59   7e-08
(Q76N89) RecName: Full=E3 ubiquitin-protein ligase HECW1;       ...    58   9e-08
AB048365_1(AB048365|pid:none) Homo sapiens NEDL1 mRNA for NEDD4-...    58   9e-08
AB002320_1(AB002320|pid:none) Homo sapiens KIAA0322 mRNA, partia...    58   9e-08
BC167464_1(BC167464|pid:none) Xenopus tropicalis hypothetical pr...    58   9e-08
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.26  alm: 0.64  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SLB783 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLB783E
Full length Seq. 
>SLB783E.Seq
AGACAATAATACCTCCAAATAATGTTCAGCAACAACAACCACAACAAACTGAAAAACCAA
GTATTTATCAAGTATTTGGACAACAGATTGATCAAGGTTTACCAAATGGTTGGGAAGTTC
GTCAAGATCAATTTGGTAGAGTATTTTATGTTGATCATATCAATCGTGCCACTACTTGGA
CTCGTCCAACTGTAAAACATCCAAAACAACACCAACAGGCTACACTTGTACAA
Length of full length seq. 233