NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLB873
Library SL
(Link to library)
Clone ID SLB873
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11142-1
Original site URL
Representative seq. ID SLB873E
(Link to Original site)
Representative DNA sequence 
>SLB873 (SLB873Q) /CSM/SL/SLB8-D/SLB873Q.Seq.d/
GTTTGGGTGCTCGTCGTCCTTCACCAAAACGTTTAATTTTAAAACCTCAAGATATTAAAC
GTATGGGTGGTGTCGTCAATTTCACACCAGCCAAATTCAATATCGTTGGTGATGAACAAT
CTGAAACCTCCATTCTCACAAGCACCGGCAGTTTCCTTATCACTTGGAATTTTAGAAAAA
TTAAACAAAACATTTTGGACGTTTATCAAATTAAACAATTCCAAGATGGTGTTGTAGCTG
AACAATTTAAATCAAATAGAGATAATTCAATAGTTGTTACTTTCCCTGATAATGTAATTT
TATCAAAAAAGAAATAAATAAACAAAATAAATAAATAAATAATATATAAAATAAATTAAA
TAAATAAATAAAAA
sequence update 1998. 4.20
Translated Amino Acid sequence 
LGARRPSPKRLILKPQDIKRMGGVVNFTPAKFNIVGDEQSETSILTSTGSFLITWNFRKI
KQNILDVYQIKQFQDGVVAEQFKSNRDNSIVVTFPDNVILSKKK*inkink*iiykin*i
nk*k
Translated Amino Acid sequence (All Frames) 
Frame A:
vwvlvvlhqnv*f*nlkilnvwvvssishqpnsislvmnnlkppfsqapavslslgilek
lnktfwtfiklnnskmvl*lnnlnqieiiq*lllslim*fyqkrnk*tk*ink*yik*ik
*ink


Frame B:
fgcsssftktfnfktsry*tygwcrqfhtsqiqyrw**ti*nlhshkhrqfpyhlef*kn
*tkhfgrlsn*tiprwccs*ti*ik*r*fnscyfp**cnfikkeinkqnk*inni*nkln
k*ik


Frame C:
LGARRPSPKRLILKPQDIKRMGGVVNFTPAKFNIVGDEQSETSILTSTGSFLITWNFRKI
KQNILDVYQIKQFQDGVVAEQFKSNRDNSIVVTFPDNVILSKKK*inkink*iiykin*i
nk*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHH412 (VHH412Q) /CSM/VH/VHH4-A/VHH412Q.Seq.d/                        603   e-172
SLB873 (SLB873Q) /CSM/SL/SLB8-D/SLB873Q.Seq.d/                        603   e-172
SLB212 (SLB212Q) /CSM/SL/SLB2-A/SLB212Q.Seq.d/                        603   e-172
SLB146 (SLB146Q) /CSM/SL/SLB1-B/SLB146Q.Seq.d/                        603   e-172
CHM543 (CHM543Q) /CSM/CH/CHM5-B/CHM543Q.Seq.d/                        603   e-172
AHH419 (AHH419Q) /CSM/AH/AHH4-A/AHH419Q.Seq.d/                        603   e-172
AHH330 (AHH330Q) /CSM/AH/AHH3-B/AHH330Q.Seq.d/                        603   e-172
AHD848 (AHD848Q) /CSM/AH/AHD8-B/AHD848Q.Seq.d/                        603   e-172
AHC648 (AHC648Q) /CSM/AH/AHC6-B/AHC648Q.Seq.d/                        603   e-172
AHC556 (AHC556Q) /CSM/AH/AHC5-C/AHC556Q.Seq.d/                        603   e-172
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...   603   e-168  1
(AU034064) Dictyostelium discoideum slug cDNA, clone SLB873.      603   e-168  1
(AU033596) Dictyostelium discoideum slug cDNA, clone SLB212.      603   e-168  1
(AU033539) Dictyostelium discoideum slug cDNA, clone SLB146.      603   e-168  1
(BJ440907) Dictyostelium discoideum cDNA clone:ddv45h04, 3' ...   603   e-168  1
(BJ383808) Dictyostelium discoideum cDNA clone:ddc47e11, 3' ...   603   e-168  1
(BJ352025) Dictyostelium discoideum cDNA clone:dda45l07, 3' ...   603   e-168  1
(BJ351933) Dictyostelium discoideum cDNA clone:dda45f06, 3' ...   603   e-168  1
(BJ350036) Dictyostelium discoideum cDNA clone:dda38p12, 3' ...   603   e-168  1
(BJ349503) Dictyostelium discoideum cDNA clone:dda36o13, 3' ...   603   e-168  1
dna update 2009. 2.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_49(AC116986|pid:none) Dictyostelium discoideum chromoso...   201   5e-51
EF612188_1(EF612188|pid:none) Dictyostelium minutum unknown (Dm0...   142   3e-33
AE017345_303(AE017345|pid:none) Cryptococcus neoformans var. neo...    96   4e-19
(Q1MTR3) RecName: Full=Vacuolar import and degradation protein 2...    85   7e-16
CU633457_256(CU633457|pid:none) Podospora anserina genomic DNA c...    76   3e-13
AM920435_379(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    74   1e-12
AP007151_1191(AP007151|pid:none) Aspergillus oryzae RIB40 genomi...    73   3e-12
FM992693_11(FM992693|pid:none) Candida dubliniensis CD36 chromos...    70   3e-11
CR382135_411(CR382135|pid:none) Debaryomyces hansenii strain CBS...    67   2e-10
(P40157) RecName: Full=Vacuolar import and degradation protein 2...    48   9e-05
protein update 2009. 7. 4
PSORT 

 psg: 0.65  gvh: 0.38  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for SLB873 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLB873E
Full length Seq. 
>SLB873E.Seq
GTTTGGGTGCTCGTCGTCCTTCACCAAAACGTTTAATTTTAAAACCTCAAGATATTAAAC
GTATGGGTGGTGTCGTCAATTTCACACCAGCCAAATTCAATATCGTTGGTGATGAACAAT
CTGAAACCTCCATTCTCACAAGCACCGGCAGTTTCCTTATCACTTGGAATTTTAGAAAAA
TTAAACAAAACATTTTGGACGTTTATCAAATTAAACAATTCCAAGATGGTGTTGTAGCTG
AACAATTTAAATCAAATAGAGATAATTCAATAGTTGTTACTTTCCCTGATAATGTAATTT
TATCAAAAAAGAAATAAATAAACAAAATAAATAAATAAATAATATATAAAATAAATTAAA
TAAATAAATAAAAA
Length of full length seq. 374