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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC228
Library SL
(Link to library)
Clone ID SLC228
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12865-1
Original site URL
Representative seq. ID SLC228F
(Link to Original site)
Representative DNA sequence 
>SLC228 (SLC228Q) /CSM/SL/SLC2-B/SLC228Q.Seq.d/
AAAAAAAAAAAAAAAAAAAAAAAAAAAATATAATTAAATAATAATTAATTTATTACAATA
AAAAAAGAAAAAAAATGAGATTATTAGCAGCATTTCTTTTAGTTATTTATGCAGCACATA
ATGGAGTATTTGCAAGAGATCATATTGTTTCATTATCAAAAGGTGAAAGTTTTGAATTAA
ATATTGAACAAGGTGATAGAATTAATTTCCATGTAAGAGATAATAATAAACATGTTTTAA
CCATTCAAGGAGAATCTCAATCATTTGCAAACCTTTCTCCAAAAGATTCTGCCAAGCAAC
AATTTAATGAAGCTGGTGAATTCATTGTTACCGATTCAGCTAATATCTATGTCAATAAGG
TTATAGTAAGTCAAAAACAACAACAAGATCAACAAAAATGGTTTGAAAAGGATGCTAAAG
ATCATGCCAACAAAATGGCAGCAACTAAAGATATGGAACAACATGAACATGAGGATCTCC
AAAATACAAATGATGCTCAAAACAATGAAAATGCTAAACCAAATTCAGCAGCCACCAAAG
ATTCAAATACCGCTAACAATAAAGCTAAACCATCATCAAATGTTAGTGATAACXXXXXXX
XXX
sequence update 1999. 1.11
Translated Amino Acid sequence 
kkkkkkkkniik**LIYYNKKRKKMRLLAAFLLVIYAAHNGVFARDHIVSLSKGESFELN
IEQGDRINFHVRDNNKHVLTIQGESQSFANLSPKDSAKQQFNEAGEFIVTDSANIYVNKV
IVSQKQQQDQQKWFEKDAKDHANKMAATKDMEQHEHEDLQNTNDAQNNENAKPNSAATKD
SNTANNKAKPSSNVSD---
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkkkkkkki*lnnn*fitikkekk*dy*qhff*lfmqhimeylqeiilfhyqkvkvln*
ilnkvielism*eiiinmf*pfkenlnhlqtflqkilpsnnlmklvnsllpiqlismsir
l**vknnnkinknglkrmlkimptkwqqlkiwnnmnmriskiqmmlktmkmlnqiqqppk
iqipltiklnhhqmlvi---


Frame B:
kkkkkkkkkyn*iiinllq*kkkkneiissisfsylcst*wsickrsycfiikr*kf*ik
y*tr**n*fpckr***tcfnhsrrisiickpfskrfcqati**sw*ihcyrfs*ylcq*g
ysksktttrstkmv*kgc*rscqqngsn*rygtt*t*gspkyk*cskq*kc*tkfsshqr
fkyr*q*s*tiikc***---


Frame C:
kkkkkkkkniik**LIYYNKKRKKMRLLAAFLLVIYAAHNGVFARDHIVSLSKGESFELN
IEQGDRINFHVRDNNKHVLTIQGESQSFANLSPKDSAKQQFNEAGEFIVTDSANIYVNKV
IVSQKQQQDQQKWFEKDAKDHANKMAATKDMEQHEHEDLQNTNDAQNNENAKPNSAATKD
SNTANNKAKPSSNVSD---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK138 (SSK138Q) /CSM/SS/SSK1-B/SSK138Q.Seq.d/                       1027   0.0
SLC228 (SLC228Q) /CSM/SL/SLC2-B/SLC228Q.Seq.d/                       1027   0.0
CHR152 (CHR152Q) /CSM/CH/CHR1-C/CHR152Q.Seq.d/                       1027   0.0
CHE847 (CHE847Q) /CSM/CH/CHE8-B/CHE847Q.Seq.d/                       1027   0.0
SLC285 (SLC285Q) /CSM/SL/SLC2-D/SLC285Q.Seq.d/                       1023   0.0
SSJ469 (SSJ469Q) /CSM/SS/SSJ4-C/SSJ469Q.Seq.d/                       1017   0.0
CHP272 (CHP272Q) /CSM/CH/CHP2-C/CHP272Q.Seq.d/                       1017   0.0
SSA113 (SSA113Q) /CSM/SS/SSA1-A/SSA113Q.Seq.d/                       1011   0.0
CHD680 (CHD680Q) /CSM/CH/CHD6-D/CHD680Q.Seq.d/                        971   0.0
CHB182 (CHB182Q) /CSM/CH/CHB1-D/CHB182Q.Seq.d/                        971   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060915) Dictyostelium discoideum slug cDNA, clone SLC228.     1025   0.0    1
(BJ385917) Dictyostelium discoideum cDNA clone:ddc56g13, 3' ...  1025   0.0    1
(BJ378290) Dictyostelium discoideum cDNA clone:ddc31n12, 3' ...  1025   0.0    1
(AU060931) Dictyostelium discoideum slug cDNA, clone SLC285.     1021   0.0    1
(BJ383345) Dictyostelium discoideum cDNA clone:ddc52o18, 3' ...  1017   0.0    1
(C24618) Dictyostelium discoideum slug cDNA, clone SL-X013.       862   0.0    2
(BJ377489) Dictyostelium discoideum cDNA clone:ddc24c21, 3' ...   971   0.0    1
(BJ376796) Dictyostelium discoideum cDNA clone:ddc29o20, 3' ...   971   0.0    1
(BJ383041) Dictyostelium discoideum cDNA clone:ddc46n16, 3' ...   959   0.0    1
(BJ375185) Dictyostelium discoideum cDNA clone:ddc17b21, 3' ...   866   0.0    2
dna update 2009. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM992693_264(FM992693|pid:none) Candida dubliniensis CD36 chromo...    39   0.11
AE001362_162(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.11
AK067892_1(AK067892|pid:none) Oryza sativa Japonica Group cDNA c...    38   0.18
AL035476_66(AL035476|pid:none) Plasmodium falciparum MAL4P3.  &A...    38   0.18
AE014188_26(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    38   0.18
AE014186_398(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.31
AC116977_78(AC116977|pid:none) Dictyostelium discoideum chromoso...    37   0.41
AL844508_260(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.41
AL844506_176(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.41
AF282241_1(AF282241|pid:none) Plasmodium falciparum strain K1 ch...    36   0.69
protein update 2009. 6. 1
PSORT 

 psg: 0.82  gvh: 0.65  alm: 0.30  top: 0.20  tms: 0.07  mit: 0.36  mip: 0.03
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.77  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: Golgi
	 20.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for SLC228 is cyt
5' end seq. ID SLC228F
5' end seq. 
>SLC228F.Seq
AAAAAAAAAAAAAAAAAAAAAAAAAAAATATAATTAAATAATAATTAATTTATTACAATA
AAAAAAGAAAAAAAATGAGATTATTAGCAGCATTTCTTTTAGTTATTTATGCAGCACATA
ATGGAGTATTTGCAAGAGATCATATTGTTTCATTATCAAAAGGTGAAAGTTTTGAATTAA
ATATTGAACAAGGTGATAGAATTAATTTCCATGTAAGAGATAATAATAAACATGTTTTAA
CCATTCAAGGAGAATCTCAATCATTTGCAAACCTTTCTCCAAAAGATTCTGCCAAGCAAC
AATTTAATGAAGCTGGTGAATTCATTGTTACCGATTCAGCTAATATCTATGTCAATAAGG
TTATAGTAAGTCAAAAACAACAACAAGATCAACAAAAATGGTTTGAAAAGGATGCTAAAG
ATCATGCCAACAAAATGGCAGCAACTAAAGATATGGAACAACATGAACATGAGGATCTCC
AAAATACAAATGATGCTCAAAACAATGAAAATGCTAAACCAAATTCAGCAGCCACCAAAG
ATTCAAATACCGCTAACAATAAAGCTAAACCATCATCAAATGTTAGTGATAAC-------
---
Length of 5' end seq. 593
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -