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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC389
Library SL
(Link to library)
Clone ID SLC389
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13983-1
Original site URL
Representative seq. ID SLC389F
(Link to Original site)
Representative DNA sequence 
>SLC389 (SLC389Q) /CSM/SL/SLC3-D/SLC389Q.Seq.d/
ANAAAAAAAAAACAACAAAAAAAAAAAAAGGCATCTCAATTGAAAGTTTAATAAGAAGAA
GGATATATTAGTGGAAGTTAGAGCAGCAGTAGTAGTAGTAGCAGTAGTAGTAGTTAGGTT
GTTGTAGAAGTACGTGATTGGGAGACAAACGCCTTTGTGTGTATATATAGTTTAGAAAAA
GTGACGAAACCTGAAAAAGAAAAGAAAGAAAAAGTAAGCAAGACTTCATCTAAGATGGGT
TCTTCTTCAAGTAAATCCTCGTCTTCTGTGACGGTTGCTTCTTCAATAGATTATAAAGCA
AAACCAACAATAGACGAATTAGGTACATCATTTTATAGTGGTGGTTTAGAAGTTTCAAAA
AATCTGTTAGACTTTAATTTAGGTGAAAAACCATGCCCATTAAAGTCGGTTGTACAAGAT
CAATTCACAATTAGTAATTCAAGTAAAACAAAATTAAAGTTTCATTTTGAACCTTTACAA
CCAAAAGAATTTCAATTAAGTTTTAGTCCTACATCTGGATCACTTGATAAAGGAAAAAGT
AAAACAATTAAAGTTAAATTAATGGTTAATCAAAAGATAAATACAAATCATAAAGTTGTA
TTAAGAGTTGAAGGTGGAGCATCACATTTTTTAACGGTTAAXXXXXXXXXX
sequence update 1999. 1.19
Translated Amino Acid sequence 
xkkkqqkkkkasqlkv**eegyisgs*sssssssssss*VVVEVRDWETNAFVCIYSLEK
VTKPEKEKKEKVSKTSSKMGSSSSKSSSSVTVASSIDYKAKPTIDELGTSFYSGGLEVSK
NLLDFNLGEKPCPLKSVVQDQFTISNSSKTKLKFHFEPLQPKEFQLSFSPTSGSLDKGKS
KTIKVKLMVNQKINTNHKVVLRVEGGASHFLTV---
Translated Amino Acid sequence (All Frames) 
Frame A:
xkkkqqkkkkasqlkv**eegyisgs*sssssssssss*VVVEVRDWETNAFVCIYSLEK
VTKPEKEKKEKVSKTSSKMGSSSSKSSSSVTVASSIDYKAKPTIDELGTSFYSGGLEVSK
NLLDFNLGEKPCPLKSVVQDQFTISNSSKTKLKFHFEPLQPKEFQLSFSPTSGSLDKGKS
KTIKVKLMVNQKINTNHKVVLRVEGGASHFLTV---


Frame B:
xkknnkkkkrhln*kfnkkkdilvevraavvvvavvvvrll*kyvigrqtplcvyiv*kk
*rnlkkkrkkk*arlhlrwvllqvnprll*rlllq*iikqnqq*tn*vhhfivvv*kfqk
ic*tli*vknhah*srlykinsqlviqvkqn*sfilnlynqknfn*vlvlhldhlikekv
kqlkln*wlikr*iqiikly*elkvehhif*rl---


Frame C:
kkkttkkkkgisieslirrriy*wkleqq****q***lgccrst*lgdkrlcvyi*frks
det*krkerkskqdfi*dgfffk*ilvfcdgcffnrl*sktnnrriryiil*wwfrsfkk
svrl*fr*ktmpikvgctrsihn**fk*nkikvsf*tfttkrisikf*syiwit**rkk*
nn*s*ing*skdkyks*sciks*rwsitffng---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC389 (SLC389Q) /CSM/SL/SLC3-D/SLC389Q.Seq.d/                        848   0.0
SLH586 (SLH586Q) /CSM/SL/SLH5-D/SLH586Q.Seq.d/                        833   0.0
SFK348 (SFK348Q) /CSM/SF/SFK3-B/SFK348Q.Seq.d/                        833   0.0
AFN870 (AFN870Q) /CSM/AF/AFN8-C/AFN870Q.Seq.d/                        833   0.0
SSD511 (SSD511Q) /CSM/SS/SSD5-A/SSD511Q.Seq.d/                        668   0.0
SSA570 (SSA570Q) /CSM/SS/SSA5-C/SSA570Q.Seq.d/                        505   e-142
SSL396 (SSL396Q) /CSM/SS/SSL3-D/SSL396Q.Seq.d/                        155   1e-36
SLD663 (SLD663Q) /CSM/SL/SLD6-C/SLD663Q.Seq.d/                        155   1e-36
AFM818 (AFM818Q) /CSM/AF/AFM8-A/AFM818Q.Seq.d/                         76   7e-13
AFO806 (AFO806Q) /CSM/AF/AFO8-A/AFO806Q.Seq.d/                         60   4e-08
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060959) Dictyostelium discoideum slug cDNA, clone SLC389.      620   0.0    4
(AU062104) Dictyostelium discoideum slug cDNA, clone SLH586.      605   0.0    4
(BJ328564) Dictyostelium discoideum cDNA clone:dda28l18, 5' ...   605   0.0    4
(BJ390191) Dictyostelium discoideum cDNA clone:dds21p11, 5' ...   605   0.0    2
(AU072706) Dictyostelium discoideum slug cDNA, clone SSA570.      280   4e-82  2
(AU061278) Dictyostelium discoideum slug cDNA, clone SLD663.      117   2e-63  3
(AU074628) Dictyostelium discoideum slug cDNA, clone SSL396.      117   5e-61  3
(AU072143) Dictyostelium discoideum slug cDNA, clone SSD511.      117   5e-51  3
(BJ329716) Dictyostelium discoideum cDNA clone:dda26d06, 5' ...    74   3e-12  2
(BJ346192) Dictyostelium discoideum cDNA clone:dda30l02, 3' ...    60   1e-04  1
dna update 2009. 3. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q552C1) RecName: Full=Probable serine/threonine-protein kinase ...    46   8e-04
(Q54Y90) RecName: Full=Probable serine/threonine-protein kinase ...    45   0.002
BX548070_9(BX548070|pid:none) Zebrafish DNA sequence from clone ...    35   1.8
AM436609_2(AM436609|pid:none) Vitis vinifera contig VV78X237456....    34   3.2
AM270325_54(AM270325|pid:none) Aspergillus niger contig An14c018...    33   9.2
protein update 2009. 1.21
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SLC389 is cyt
5' end seq. ID SLC389F
5' end seq. 
>SLC389F.Seq
ANAAAAAAAAAACAACAAAAAAAAAAAAAGGCATCTCAATTGAAAGTTTAATAAGAAGAA
GGATATATTAGTGGAAGTTAGAGCAGCAGTAGTAGTAGTAGCAGTAGTAGTAGTTAGGTT
GTTGTAGAAGTACGTGATTGGGAGACAAACGCCTTTGTGTGTATATATAGTTTAGAAAAA
GTGACGAAACCTGAAAAAGAAAAGAAAGAAAAAGTAAGCAAGACTTCATCTAAGATGGGT
TCTTCTTCAAGTAAATCCTCGTCTTCTGTGACGGTTGCTTCTTCAATAGATTATAAAGCA
AAACCAACAATAGACGAATTAGGTACATCATTTTATAGTGGTGGTTTAGAAGTTTCAAAA
AATCTGTTAGACTTTAATTTAGGTGAAAAACCATGCCCATTAAAGTCGGTTGTACAAGAT
CAATTCACAATTAGTAATTCAAGTAAAACAAAATTAAAGTTTCATTTTGAACCTTTACAA
CCAAAAGAATTTCAATTAAGTTTTAGTCCTACATCTGGATCACTTGATAAAGGAAAAAGT
AAAACAATTAAAGTTAAATTAATGGTTAATCAAAAGATAAATACAAATCATAAAGTTGTA
TTAAGAGTTGAAGGTGGAGCATCACATTTTTTAACGGTTAA----------
Length of 5' end seq. 641
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -