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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC418
Library SL
(Link to library)
Clone ID SLC418
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15820-1
Original site URL
Representative seq. ID SLC418E
(Link to Original site)
Representative DNA sequence 
>SLC418 (SLC418Q) /CSM/SL/SLC4-A/SLC418Q.Seq.d/
CAAAATAAAATAAATTATAATTAAAAGTTTAATAATTTTTTAAATCACTACACAATAGAA
ATAAATTTAATTTTAAAGAAAAAAAAAAAAAAAAAAACAATAAAATAAAATAATTAATTA
AAAATAAAAAATAAAAAATAAAAAAATGGTAAAAGTAGTACCACTTAGATTTATAACCTA
TGATCCTTTAAAGGATCCAAGTAAAATGATTTATAGACGACCAATTTCAAAACCAGTAAA
AGCATTTAAAGGTTTCTTTTCAGAATTTTTAGGAGCATTATATTTGGTTTATTTCTGTGG
TGGGTCAGTATGTGCAGCTTTTGCAGTTGCAGGTGATAGTGCAGCTCGTGCATTATTAGG
AGGACTAATTCAAGGTATGGCATTGGCTGCATTAATTTGGGCAGTATCTGGTGTTTCAGG
TTGTAATTTAAATCCAGCTGTAACTTTAGCAAATTTATTATCTGGTAGAGTCGGTTTAAT
TGATAGTCTATATTATGTTGCAGCCCAAATTCTTGGTTGTATTGCCGGTGCTGGTATCTT
ATATGGTTGCCTTCCAAATATGTATAGAATTGACTTGGGTGTTCCACATTTAGCACCTGG
TATGAATACTGGTCAAGCTTTCCTCATGGAGATGATGTTAACTAGTATTCTATGTCTTTG
TGTATTAGGTACCTCTGTTTTCAATGTTTGGGATCGTCGTCTTAATCGTATTGCACCATT
TGCAATTGGTTTAGCTTTATTTATTGGAGTAGCAATAGGTTTTAATTTCTCTGGAGGTGC
TTTAAATCCAGTTAGAGTTTTAGGCCCATCAATCATAAGTGGAGTATGGTCTCATCATTG
GGTTTATTGGCTCGGTCCTATAGTTGGGGCCATCTTGGCTGCTTTCATCTATCGTTGCTT
ATTACAAGAACGTTTTGATGTTATAGAAAGACCTGGATATATTGCACCATTAACCGACCC
ATCAACTGCAGTTTCTTCTTATTAAAATAATAATGAAATAACACTATATGACCTTAATCA
TTATTTAAATAAAAACATAATTAAACTATATAAATTAGAACCTATTGACCAAAAAA
sequence update 1999. 7.28
Translated Amino Acid sequence 
kik*iiiksliif*ittq*k*i*f*rkkkkkkq*nkiin*k*KIKNKKMVKVVPLRFITY
DPLKDPSKMIYRRPISKPVKAFKGFFSEFLGALYLVYFCGGSVCAAFAVAGDSAARALLG
GLIQGMALAALIWAVSGVSGCNLNPAVTLANLLSGRVGLIDSLYYVAAQILGCIAGAGIL
YGCLPNMYRIDLGVPHLAPGMNTGQAFLMEMMLTSILCLCVLGTSVFNVWDRRLNRIAPF
AIGLALFIGVAIGFNFSGGALNPVRVLGPSIISGVWSHHWVYWLGPIVGAILAAFIYRCL
LQERFDVIERPGYIAPLTDPSTAVSSY*nnneitlydlnhylnkniiklyklepidqk
Translated Amino Acid sequence (All Frames) 
Frame A:
qnkinyn*kfnnflnhytieinlilkkkkkkktik*nn*lkiknkk*kngksstt*iynl
*sfkgsk*ndl*ttnfktsksi*rflfrifrsiifglflwwvsmcsfcscr**cssciir
rtnsrygigcinlgsiwcfrl*fksscnfskfiiw*srfn**silccspnswlycrcwyl
iwlpskyv*n*lgcstfstwyeywssfphgddvn*ysmslcirylcfqclgsss*sycti
cnwfsfiywssnrf*flwrcfkss*sfrpinhkwsmvsslgllarsyswghlgcfhlsll
itrtf*cyrktwiyctinrpincsffllk***nnti*p*slfk*khn*ti*irty*pk


Frame B:
kik*iiiksliif*ittq*k*i*f*rkkkkkkq*nkiin*k*KIKNKKMVKVVPLRFITY
DPLKDPSKMIYRRPISKPVKAFKGFFSEFLGALYLVYFCGGSVCAAFAVAGDSAARALLG
GLIQGMALAALIWAVSGVSGCNLNPAVTLANLLSGRVGLIDSLYYVAAQILGCIAGAGIL
YGCLPNMYRIDLGVPHLAPGMNTGQAFLMEMMLTSILCLCVLGTSVFNVWDRRLNRIAPF
AIGLALFIGVAIGFNFSGGALNPVRVLGPSIISGVWSHHWVYWLGPIVGAILAAFIYRCL
LQERFDVIERPGYIAPLTDPSTAVSSY*nnneitlydlnhylnkniiklyklepidqk


Frame C:
k*nkl*lkv**ffkslhnrnkfnfkekkkkknnkik*liknkk*kikkw*k*yhldl*pm
il*riqvk*fiddqfqnq*khlkvsfqnf*ehyiwfisvvgqyvqllqlqvivqlvhy*e
d*fkvwhwlh*fgqylvfqvvi*iql*l*qiyylvesv*livyimlqpkflvvlpvlvsy
mvafqicieltwvfhi*hlv*ilvklsswr*c*lvfyvfvy*vplfsmfgivvlivlhhl
qlv*lylle*q*vlislevl*iqlef*ahqs*veygliigfigsvl*lgpswllssivay
yknvlml*kdldilhh*pthqlqfllikiimk*hymtliii*ikt*lnyin*nlltkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC418 (SLC418Q) /CSM/SL/SLC4-A/SLC418Q.Seq.d/                       1844   0.0
SSD468 (SSD468Q) /CSM/SS/SSD4-C/SSD468Q.Seq.d/                       1522   0.0
SSJ351 (SSJ351Q) /CSM/SS/SSJ3-C/SSJ351Q.Seq.d/                       1298   0.0
SSD296 (SSD296Q) /CSM/SS/SSD2-D/SSD296Q.Seq.d/                       1263   0.0
SLC875 (SLC875Q) /CSM/SL/SLC8-D/SLC875Q.Seq.d/                       1247   0.0
SSC789 (SSC789Q) /CSM/SS/SSC7-D/SSC789Q.Seq.d/                       1237   0.0
SSH854 (SSH854Q) /CSM/SS/SSH8-C/SSH854Q.Seq.d/                       1213   0.0
CFG359 (CFG359Q) /CSM/CF/CFG3-C/CFG359Q.Seq.d/                       1197   0.0
CHB271 (CHB271Q) /CSM/CH/CHB2-C/CHB271Q.Seq.d/                       1187   0.0
CFG195 (CFG195Q) /CSM/CF/CFG1-D/CFG195Q.Seq.d/                       1152   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AB008431) Dictyostelium discoideum aqpA mRNA for aquaporin,...  1792   0.0    1
(AB032841) Dictyostelium discoideum aqpA gene for aquaporin,...  1310   0.0    1
(C92254) Dictyostelium discoideum slug cDNA, clone SSD296.       1263   0.0    1
(AU034437) Dictyostelium discoideum slug cDNA, clone SLC875.     1247   0.0    1
(AU038547) Dictyostelium discoideum slug cDNA, clone SSH854.     1213   0.0    1
(BJ372654) Dictyostelium discoideum cDNA clone:ddc13f15, 3' ...  1197   0.0    1
(BJ377466) Dictyostelium discoideum cDNA clone:ddc24m18, 3' ...  1187   0.0    1
(BJ372740) Dictyostelium discoideum cDNA clone:ddc13m23, 3' ...  1152   0.0    1
(BJ378136) Dictyostelium discoideum cDNA clone:ddc27m12, 3' ...  1126   0.0    1
(C89716) Dictyostelium discoideum slug cDNA, clone SSG234.       1112   0.0    1
dna update 2009. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9WTY4) RecName: Full=Aquaporin-5;          Short=AQP-5;  &AF08...   149   2e-34
(Q06019) RecName: Full=Lens fiber major intrinsic protein; AltNa...   149   2e-34
AY890983_1(AY890983|pid:none) Synthetic construct Homo sapiens c...   149   2e-34
AY894080_1(AY894080|pid:none) Synthetic construct Homo sapiens c...   149   2e-34
(Q9V5Z7) RecName: Full=Aquaporin;  &AE013599_1356(AE013599|pid:n...   146   1e-33
(P47864) RecName: Full=Aquaporin-5;          Short=AQP-5;  &A556...   145   2e-33
(A8W649) RecName: Full=Aquaporin-5;          Short=AQP-5;  &EU19...   145   2e-33
AB433197_1(AB433197|pid:none) Coptotermes formosanus CfAQP1 mRNA...   144   4e-33
(Q25074) RecName: Full=Aquaporin; AltName: Full=Water channel 1;...   144   4e-33
AB292479_1(AB292479|pid:none) Amoeba proteus AQP gene for aquapo...   144   4e-33
protein update 2009. 7. 4
PSORT 

 psg: 0.79  gvh: 0.62  alm: 0.24  top: 0.40  tms: 0.40  mit: 0.34  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: plasma membrane
	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall
	  4.0 %: nuclear

>> prediction for SLC418 is pla
5' end seq. ID SLC418F
5' end seq. 
>SLC418F.Seq
CAAAATAAAATAAATTATAATTAAAAGTTTAATAATTTTTTAAATCACTACACAATAGAA
ATAAATTTAATTTTAAAGAAAAAAAAAAAAAAAAAAACAATAAAATAAAATAATTAATTA
AAAATAAAAAATAAAAAATAAAAAAATGGTAAAAGTAGTACCACTTAGATTTATAACCTA
TGATCCTTTAAAGGATCCAAGTAAAATGATTTATAGACGACCAATTTCAAAACCAGTAAA
AGCATTTAAAGGTTTCTTTTCAGAATTTTTAGGAGCATTATATTTGGTTTATTTCTGTGG
TGGGTCAGTATGTGCAGCTTTTGCAGTTGCAGGTGATAGTGCAGCTCGTGCATTATTAGG
AGGACTAATTCAAGGTATGGCATTGGCTGCATTAATTTGGGCAGTATCTGGTGTTTCAGG
TTGTAATTTAAATCCAGCTGTAACTTTAGCAAATTTATTATCTGGTAGAGTCGGTTTAAT
TGATAGTCTATATTATGTTGCAGCCCAAATTCTTGGTTGTATTGCCGGTGCTGGTATCTT
ATATGGTTGCCTTCCAAATATGTATAGAATTGACTTGGGTGTTCCACATTTAGCACCTGG
TATG----------
Length of 5' end seq. 604
3' end seq. ID SLC418Z
3' end seq. 
>SLC418Z.Seq
----------TGCCGGTGCTGGTATCTTATATGGTTGCCTTCCAAATATGTATAGAATTG
ACTTGGGTGTTCCACATTTAGCACCTGGTATGAATACTGGTCAAGCTTTCCTCATGGAGA
TGATGTTAACTAGTATTCTATGTCTTTGTGTATTAGGTACCTCTGTTTTCAATGTTTGGG
ATCGTCGTCTTAATCGTATTGCACCATTTGCAATTGGTTTAGCTTTATTTATTGGAGTAG
CAATAGGTTTTAATTTCTCTGGAGGTGCTTTAAATCCAGTTAGAGTTTTAGGCCCATCAA
TCATAAGTGGAGTATGGTCTCATCATTGGGTTTATTGGCTCGGTCCTATAGTTGGGGCCA
TCTTGGCTGCTTTCATCTATCGTTGCTTATTACAAGAACGTTTTGATGTTATAGAAAGAC
CTGGATATATTGCACCATTAACCGACCCATCAACTGCAGTTTCTTCTTATTAAAATAATA
ATGAAATAACACTATATGACCTTAATCATTATTTAAATAAAAACATAATTAAACTATATA
AATTAGAACCTATTGACCAAAAAA
Length of 3' end seq. 554
Connected seq. ID SLC418P
Connected seq. 
>SLC418P.Seq
CAAAATAAAATAAATTATAATTAAAAGTTTAATAATTTTTTAAATCACTACACAATAGAA
ATAAATTTAATTTTAAAGAAAAAAAAAAAAAAAAAAACAATAAAATAAAATAATTAATTA
AAAATAAAAAATAAAAAATAAAAAAATGGTAAAAGTAGTACCACTTAGATTTATAACCTA
TGATCCTTTAAAGGATCCAAGTAAAATGATTTATAGACGACCAATTTCAAAACCAGTAAA
AGCATTTAAAGGTTTCTTTTCAGAATTTTTAGGAGCATTATATTTGGTTTATTTCTGTGG
TGGGTCAGTATGTGCAGCTTTTGCAGTTGCAGGTGATAGTGCAGCTCGTGCATTATTAGG
AGGACTAATTCAAGGTATGGCATTGGCTGCATTAATTTGGGCAGTATCTGGTGTTTCAGG
TTGTAATTTAAATCCAGCTGTAACTTTAGCAAATTTATTATCTGGTAGAGTCGGTTTAAT
TGATAGTCTATATTATGTTGCAGCCCAAATTCTTGGTTGTATTGCCGGTGCTGGTATCTT
ATATGGTTGCCTTCCAAATATGTATAGAATTGACTTGGGTGTTCCACATTTAGCACCTGG
TATG----------TGCCGGTGCTGGTATCTTATATGGTTGCCTTCCAAATATGTATAGA
ATTGACTTGGGTGTTCCACATTTAGCACCTGGTATGAATACTGGTCAAGCTTTCCTCATG
GAGATGATGTTAACTAGTATTCTATGTCTTTGTGTATTAGGTACCTCTGTTTTCAATGTT
TGGGATCGTCGTCTTAATCGTATTGCACCATTTGCAATTGGTTTAGCTTTATTTATTGGA
GTAGCAATAGGTTTTAATTTCTCTGGAGGTGCTTTAAATCCAGTTAGAGTTTTAGGCCCA
TCAATCATAAGTGGAGTATGGTCTCATCATTGGGTTTATTGGCTCGGTCCTATAGTTGGG
GCCATCTTGGCTGCTTTCATCTATCGTTGCTTATTACAAGAACGTTTTGATGTTATAGAA
AGACCTGGATATATTGCACCATTAACCGACCCATCAACTGCAGTTTCTTCTTATTAAAAT
AATAATGAAATAACACTATATGACCTTAATCATTATTTAAATAAAAACATAATTAAACTA
TATAAATTAGAACCTATTGACCAAAAAA
Length of connected seq. 1158
Full length Seq ID SLC418E
Full length Seq. 
>SLC418E.Seq
CAAAATAAAATAAATTATAATTAAAAGTTTAATAATTTTTTAAATCACTACACAATAGAA
ATAAATTTAATTTTAAAGAAAAAAAAAAAAAAAAAAACAATAAAATAAAATAATTAATTA
AAAATAAAAAATAAAAAATAAAAAAATGGTAAAAGTAGTACCACTTAGATTTATAACCTA
TGATCCTTTAAAGGATCCAAGTAAAATGATTTATAGACGACCAATTTCAAAACCAGTAAA
AGCATTTAAAGGTTTCTTTTCAGAATTTTTAGGAGCATTATATTTGGTTTATTTCTGTGG
TGGGTCAGTATGTGCAGCTTTTGCAGTTGCAGGTGATAGTGCAGCTCGTGCATTATTAGG
AGGACTAATTCAAGGTATGGCATTGGCTGCATTAATTTGGGCAGTATCTGGTGTTTCAGG
TTGTAATTTAAATCCAGCTGTAACTTTAGCAAATTTATTATCTGGTAGAGTCGGTTTAAT
TGATAGTCTATATTATGTTGCAGCCCAAATTCTTGGTTGTATTGCCGGTGCTGGTATCTT
ATATGGTTGCCTTCCAAATATGTATAGAATTGACTTGGGTGTTCCACATTTAGCACCTGG
TATGAATACTGGTCAAGCTTTCCTCATGGAGATGATGTTAACTAGTATTCTATGTCTTTG
TGTATTAGGTACCTCTGTTTTCAATGTTTGGGATCGTCGTCTTAATCGTATTGCACCATT
TGCAATTGGTTTAGCTTTATTTATTGGAGTAGCAATAGGTTTTAATTTCTCTGGAGGTGC
TTTAAATCCAGTTAGAGTTTTAGGCCCATCAATCATAAGTGGAGTATGGTCTCATCATTG
GGTTTATTGGCTCGGTCCTATAGTTGGGGCCATCTTGGCTGCTTTCATCTATCGTTGCTT
ATTACAAGAACGTTTTGATGTTATAGAAAGACCTGGATATATTGCACCATTAACCGACCC
ATCAACTGCAGTTTCTTCTTATTAAAATAATAATGAAATAACACTATATGACCTTAATCA
TTATTTAAATAAAAACATAATTAAACTATATAAATTAGAACCTATTGACCAAAAAA
Length of full length seq. 1076