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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD284
Library SL
(Link to library)
Clone ID SLD284
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16447-1
Original site URL
Representative seq. ID SLD284Z
(Link to Original site)
Representative DNA sequence 
>SLD284 (SLD284Q) /CSM/SL/SLD2-D/SLD284Q.Seq.d/
XXXXXXXXXXTCGCCCTTCGTGGTTTGAAGACTCTCCACGTTCGTATGGAAGCTCATCAA
AAGAATGCTTTCGCCATTTGCAATTTCCTCGAAAAACATCCAAAAGTTGAAAGAGTCATC
TATCCAGGTCTCCCATCTCATCCACAACATGAGATTTGCAAACGTCAAATGAAAGGTTAT
GGTGGTATGGTTGTTTTCTTTGTTAAAGGTTCAATCGATCAAAGCAGATCTTTCTTGGAG
AATATTAAACTCTTTGCTCTTGCTGAATCTTTAGGTGGTGTCGAATCTTTAATTGAACTT
CCATCAGTTATGACTCACGCAAGTGTTCCAGCTGAAGAAAGAGCTAAACTCGGTATCTCT
GATACTTTAATTCGTTTATCCGTTGGTATTGAAGATATTAATGATCTTTTAGCTGATATC
TCTCAAGCTTTAGATAAATGTTAAAAAAATTAAAAAAATTAAAAATTAAAAAAATAAATA
AATAAATAATAAAAATATTTGTAATAAAGTTTTAAAATTATAATTATAA
sequence update 1998. 6. 9
Translated Amino Acid sequence 
---ALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKGYG
GMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHASVPAEERAKLGISD
TLIRLSVGIEDINDLLADISQALDKC*kn*kn*klkk*ink**kyl**sfkiiii
Translated Amino Acid sequence (All Frames) 
Frame A:
---rpswfedsprsygssskecfrhlqfprktsks*kshlsrspisstt*dlqtsnerlw
wygcflc*rfnrskqiflgey*tlcsc*ifrwcrifn*tsisydsrkcss*rks*tryl*
yfnsfirwy*ry**sfs*ylssfr*mlkklkklkikkink*iikifvikf*nyny


Frame B:
---ALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKGYG
GMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHASVPAEERAKLGISD
TLIRLSVGIEDINDLLADISQALDKC*kn*kn*klkk*ink**kyl**sfkiiii


Frame C:
---pfvv*rlstfvwklikrmlspfaisskniqklkessiqvshlihnmrfanvk*kvmv
vwlfsllkvqsikadlswrilnsllllnl*vvsnl*lnfhql*ltqvfqlkkelnsvsli
l*fvyplvlkilmif*lislkl*invkkikkikn*knk*innknicnkvlkl*l*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO678 (VFO678Q) /CSM/VF/VFO6-D/VFO678Q.Seq.d/                        856   0.0
VFN429 (VFN429Q) /CSM/VF/VFN4-B/VFN429Q.Seq.d/                        856   0.0
VFN251 (VFN251Q) /CSM/VF/VFN2-C/VFN251Q.Seq.d/                        856   0.0
VFN238 (VFN238Q) /CSM/VF/VFN2-B/VFN238Q.Seq.d/                        856   0.0
VFL833 (VFL833Q) /CSM/VF/VFL8-B/VFL833Q.Seq.d/                        856   0.0
VFL334 (VFL334Q) /CSM/VF/VFL3-B/VFL334Q.Seq.d/                        856   0.0
VFK744 (VFK744Q) /CSM/VF/VFK7-B/VFK744Q.Seq.d/                        856   0.0
VFK675 (VFK675Q) /CSM/VF/VFK6-D/VFK675Q.Seq.d/                        856   0.0
VFK651 (VFK651Q) /CSM/VF/VFK6-C/VFK651Q.Seq.d/                        856   0.0
VFK546 (VFK546Q) /CSM/VF/VFK5-B/VFK546Q.Seq.d/                        856   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052418) Dictyostelium discoideum slug cDNA, clone SLD284.      854   0.0    1
(AU039191) Dictyostelium discoideum slug cDNA, clone SLH103.      854   0.0    1
(AU034718) Dictyostelium discoideum slug cDNA, clone SLE233.      854   0.0    1
(AU034652) Dictyostelium discoideum slug cDNA, clone SLE131.      854   0.0    1
(AU034085) Dictyostelium discoideum slug cDNA, clone SLB725.      854   0.0    1
(AU033866) Dictyostelium discoideum slug cDNA, clone SLB542.      854   0.0    1
(BJ436346) Dictyostelium discoideum cDNA clone:ddv30k20, 3' ...   854   0.0    1
(BJ435570) Dictyostelium discoideum cDNA clone:ddv27e14, 3' ...   854   0.0    1
(BJ435519) Dictyostelium discoideum cDNA clone:ddv27k10, 3' ...   854   0.0    1
(BJ435511) Dictyostelium discoideum cDNA clone:ddv27j08, 3' ...   854   0.0    1
dna update 2009. 3.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55DV9) RecName: Full=Cystathionine gamma-lyase;          EC=4....   284   8e-76
BX842656_199(BX842656|pid:none) Bdellovibrio bacteriovorus compl...   204   1e-51
(P18757) RecName: Full=Cystathionine gamma-lyase;          EC=4....   192   3e-48
(Q60HG7) RecName: Full=Cystathionine gamma-lyase;          EC=4....   192   6e-48
(Q8VCN5) RecName: Full=Cystathionine gamma-lyase;          EC=4....   190   2e-47
(Q58DW2) RecName: Full=Cystathionine gamma-lyase;          EC=4....   190   2e-47
BC151523_1(BC151523|pid:none) Bos taurus cystathionase (cystathi...   190   2e-47
BC082653_1(BC082653|pid:none) Xenopus laevis hypothetical LOC494...   188   6e-47
BC067624_1(BC067624|pid:none) Danio rerio cystathionase (cystath...   188   6e-47
CP000769_3804(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c...   187   1e-46
protein update 2009. 6. 2
PSORT 

 psg: 0.52  gvh: 0.29  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SLD284 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLD284Z
3' end seq. 
>SLD284Z.Seq
----------TCGCCCTTCGTGGTTTGAAGACTCTCCACGTTCGTATGGAAGCTCATCAA
AAGAATGCTTTCGCCATTTGCAATTTCCTCGAAAAACATCCAAAAGTTGAAAGAGTCATC
TATCCAGGTCTCCCATCTCATCCACAACATGAGATTTGCAAACGTCAAATGAAAGGTTAT
GGTGGTATGGTTGTTTTCTTTGTTAAAGGTTCAATCGATCAAAGCAGATCTTTCTTGGAG
AATATTAAACTCTTTGCTCTTGCTGAATCTTTAGGTGGTGTCGAATCTTTAATTGAACTT
CCATCAGTTATGACTCACGCAAGTGTTCCAGCTGAAGAAAGAGCTAAACTCGGTATCTCT
GATACTTTAATTCGTTTATCCGTTGGTATTGAAGATATTAATGATCTTTTAGCTGATATC
TCTCAAGCTTTAGATAAATGTTAAAAAAATTAAAAAAATTAAAAATTAAAAAAATAAATA
AATAAATAATAAAAATATTTGTAATAAAGTTTTAAAATTATAATTATAA
Length of 3' end seq. 519
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -