SLF273
Library SL
(Link to library)
Clone ID SLF273
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16444-1
Original site URL
Representative seq. ID SLF273Z
(Link to Original site)
Representative DNA sequence
>SLF273 (SLF273Q) /CSM/SL/SLF2-D/SLF273Q.Seq.d/
XXXXXXXXXXCAATGGTGCTGGTGTTCAACATATCGCCTTAAAGACTGATAACATCATTG
ATGCTATCTCAAAATTAAGATCTCGTGGTGTCTCTTTCCTCACTGTTCCAAAAACATANT
ATACATCACTCAGAGAGAAATTACAACACTCTTCATTAGAAATTAAAGAAGATTTGGACA
CTTTAGAGAAATTACACATTTTAATCGATTATGATGACAAAGGTTATCTTTTACAAATCT
TTACAAATAATGTTGAAGATAAACCAACTGTTTTCTTTGAAATTATCCAAAGAAACAACC
ATGATGGTTTCGGTGCTGGTAACTTTAAATCCCTCTTTGAAGCAATCGAAAGACAACAAG
AAACTCGTGGAAACTTATAGGTGTGTCTCAATTACAAATGTTCTTTATTATTAACTAAAT
AACATTACAATATATCAAAATAAATAATAAATAAATACTCTATTTAAAAAGTAATTTTTT
AATAGTAAACAAATTAAAAAAAAAAAAAAAAAAA
sequence update 1999. 7.15
Translated Amino Acid sequence
---NGAGVQHIALKTDNIIDAISKLRSRGVSFLTVPKTXYTSLREKLQHSSLEIKEDLDT
LEKLHILIDYDDKGYLLQIFTNNVEDKPTVFFEIIQRNNHDGFGAGNFKSLFEAIERQQE
TRGNL*vclnykcsllltk*hynisk*iinkysi*kvif***tn*kkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---NGAGVQHIALKTDNIIDAISKLRSRGVSFLTVPKTXYTSLREKLQHSSLEIKEDLDT
LEKLHILIDYDDKGYLLQIFTNNVEDKPTVFFEIIQRNNHDGFGAGNFKSLFEAIERQQE
TRGNL*vclnykcsllltk*hynisk*iinkysi*kvif***tn*kkkkk


Frame B:
---mvlvfnisp*rlitslmlsqn*dlvvslsslfqkhxihhsernyntlh*klkkiwtl
*rnytf*simmtkvifykslqimlkinqlfslklskettmmvsvlvtlnpslkqskdnkk
lvetyrcvsitnvlyy*lnnitiyqnk**intlfkk*ffnskqikkkkkk


Frame C:
---wcwcstyrlkd**hh*cylkikiswclfphcsknixyitqreittlfirn*rrfghf
reithfnrl**qrlsftnlyk*c*r*tncfl*nypkkqp*wfrcw*l*ipl*snrkttrn
swkligvsqlqmffiin*itlqyikinnk*ilylksnflivnklkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ394 (VSJ394Q) /CSM/VS/VSJ3-D/VSJ394Q.Seq.d/ 799 0.0
VSH226 (VSH226Q) /CSM/VS/VSH2-B/VSH226Q.Seq.d/ 799 0.0
VSF755 (VSF755Q) /CSM/VS/VSF7-C/VSF755Q.Seq.d/ 799 0.0
VSE214 (VSE214Q) /CSM/VS/VSE2-A/VSE214Q.Seq.d/ 799 0.0
VSD101 (VSD101Q) /CSM/VS/VSD1-A/VSD101Q.Seq.d/ 799 0.0
VSB809 (VSB809Q) /CSM/VS/VSB8-A/VSB809Q.Seq.d/ 799 0.0
VHK157 (VHK157Q) /CSM/VH/VHK1-C/VHK157Q.Seq.d/ 799 0.0
VFO548 (VFO548Q) /CSM/VF/VFO5-B/VFO548Q.Seq.d/ 799 0.0
VFN489 (VFN489Q) /CSM/VF/VFN4-D/VFN489Q.Seq.d/ 799 0.0
VFN484 (VFN484Q) /CSM/VF/VFN4-D/VFN484Q.Seq.d/ 799 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116978|AC116978.1 Dictyostelium discoideum chromosome 2 map 4846697-4874480 strain AX4, *** SEQUENCING IN PROGRESS ***. 797 0.0 5
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 797 0.0 7
BM395514|BM395514.1 50072-2-9-E12.r.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 64 2e-06 1
BI322343|BI322343.1 kx19h02.y3 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:HPPD_CAEEL Q22633 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE ;, mRNA sequence. 42 3e-04 2
M59429|M59429.1 T. thermophila F-antigen (tfa) gene, complete cds. 46 0.003 2
AC118979|AC118979.7 Rattus norvegicus clone CH230-313J16, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 50 0.026 1
BD099000|BD099000.1 Novel genes cloned in humanneuroblastoma and fragments thereof. 36 0.31 2
BD019062|BD019062.1 Novel gene and novel gene fragment cloned in human neuroblastoma. 36 0.31 2
CA789018|CA789018.1 AGENCOURT_10316849 NICHD XGC OO1 Xenopus laevis cDNA clone IMAGE:5084015 5', mRNA sequence. 46 0.41 1
AB055365|AB055365.1 Macaca fascicularis brain cDNA, clone:QflA-12530. 46 0.41 1
dna update 2003. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q76NV5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase; ... 241 5e-63
AM114773_1(AM114773|pid:none) Platynereis dumerilii partial mRNA... 176 2e-43
BC046075_1(BC046075|pid:none) Danio rerio zgc:56326, mRNA (cDNA ... 170 2e-41
(Q6TGZ5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase; ... 170 2e-41
S32821(S32821;S35890;S35889)4-hydroxyphenylpyruvate dioxygenase ... 169 4e-41
(Q02110) RecName: Full=4-hydroxyphenylpyruvate dioxygenase; ... 169 4e-41
(P32754) RecName: Full=4-hydroxyphenylpyruvate dioxygenase; ... 167 2e-40
(O42764) RecName: Full=4-hydroxyphenylpyruvate dioxygenase; ... 166 2e-40
AE014296_3563(AE014296|pid:none) Drosophila melanogaster chromos... 166 4e-40
(Q5EA20) RecName: Full=4-hydroxyphenylpyruvate dioxygenase; ... 165 5e-40
protein update 2009. 4.19
PSORT

psg: 0.64 gvh: 0.37 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for SLF273 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLF273Z
3' end seq.
>SLF273Z.Seq
----------CAATGGTGCTGGTGTTCAACATATCGCCTTAAAGACTGATAACATCATTG
ATGCTATCTCAAAATTAAGATCTCGTGGTGTCTCTTTCCTCACTGTTCCAAAAACATANT
ATACATCACTCAGAGAGAAATTACAACACTCTTCATTAGAAATTAAAGAAGATTTGGACA
CTTTAGAGAAATTACACATTTTAATCGATTATGATGACAAAGGTTATCTTTTACAAATCT
TTACAAATAATGTTGAAGATAAACCAACTGTTTTCTTTGAAATTATCCAAAGAAACAACC
ATGATGGTTTCGGTGCTGGTAACTTTAAATCCCTCTTTGAAGCAATCGAAAGACAACAAG
AAACTCGTGGAAACTTATAGGTGTGTCTCAATTACAAATGTTCTTTATTATTAACTAAAT
AACATTACAATATATCAAAATAAATAATAAATAAATACTCTATTTAAAAAGTAATTTTTT
AATAGTAAACAAATTAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 504
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -