NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFK424
Library AF
(Link to library)
Clone ID AFK424
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08784-1
Original site URL
Representative seq. ID AFK424P
(Link to Original site)
Representative DNA sequence 
>AFK424 (AFK424Q) /CSM/AF/AFK4-A/AFK424Q.Seq.d/
ATTTAAATAGTTTTTTTAAGGATATTATAATTTCAAATTAAGTAATAATAAATAAAAATA
ATAATAAATAAAAATAATAATAAATAAAAATAAGAATAATAGTTTTATAAAAAAAAAAXX
XXXXXXXXGCTTTCCATAAATCTCATGGTGGTGAAGGTACAATCATGGTAACCAAAGTTG
AAGAACCTTCAAAATATGGTGTCGTTGTTTATAAAGAAGAAAATGGTCAAATCTTAAAAT
TCGTTGAAAAACCTCAAGTCTACGTTGGTAATAAAATTAATGCTGGTGTTTATATTTTTA
ATCCAACAATTTTAGATAGAATTCAACCAAAACCAACATCAATTGAAAAAGAGATTTTCC
CAGCAATGGCAGCAGATAGTCAATTATATTGTATGCAATTGGAAGGATTTTGGATGGATG
TTGGTCAACCAAAAGACTTTTTATCAGGTATGGGATTATATTTAAATTCATTAAAGTCAA
AACAACCAGAACTCTTAGCTACTGGCAATGGTATTATTGGACCAGTTTTAATTGATCCAT
CATCTGTCATTGAACCAGGTTGTTTAATTGGCCCAAACGTAACAATTGGTCCAAATTGTG
TTATTCAAGAAGGTACTCGTTTAGTTAATACAACAGTTTTAGAGGGTACTACAATTGGTA
AAAACTCTTGGATCAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
fk*ff*gyynfklsnnk*k***IKIIINKNKNNSFIKKK---

---AFHKSHGGEGTIMVTKVEEPSKYGVVVYKEENGQILKFVEKPQVYVGNKINAGVYIF
NPTILDRIQPKPTSIEKEIFPAMAADSQLYCMQLEGFWMDVGQPKDFLSGMGLYLNSLKS
KQPELLATGNGIIGPVLIDPSSVIEPGCLIGPNVTIGPNCVIQEGTRLVNTTVLEGTTIG
KNSWI
Translated Amino Acid sequence (All Frames) 
Frame A:
i*ivflril*fqik***ikiiinknnnk*k*e**fykkk---

---AFHKSHGGEGTIMVTKVEEPSKYGVVVYKEENGQILKFVEKPQVYVGNKINAGVYIF
NPTILDRIQPKPTSIEKEIFPAMAADSQLYCMQLEGFWMDVGQPKDFLSGMGLYLNSLKS
KQPELLATGNGIIGPVLIDPSSVIEPGCLIGPNVTIGPNCVIQEGTRLVNTTVLEGTTIG
KNSWI

Frame B:
fk*ff*gyynfklsnnk*k***IKIIINKNKNNSFIKKK---

---lsinlmvvkvqsw*pklknlqnmvslfikkkmvks*nslknlkstlviklmlvfifl
iqqf*iefnqnqhqlkkrfsqqwqqivnyivcnwkdfgwmlvnqktfyqvwdyi*ih*sq
nnqns*llamvlldqf*lihhlslnqvv*laqt*qlvqivlfkkvlv*liqqf*rvlqlv
ktlgs

Frame C:
lnsffkdiiisn*viinknnnk*k***ikiriivl*kk---

---fp*isww*rynhgnqs*rtfkiwcrcl*rrkwsnlkir*ktsslrw**n*cwclyf*
snnfr*nstktnin*krdfpsngsr*siilyaigrildgcwstkrlfirygiifkfikvk
ttrtlsywqwyywtsfn*siich*trlfnwpkrnnwsklcysrrysfs*ynsfrgyynw*
klldq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFK424 (AFK424Q) /CSM/AF/AFK4-A/AFK424Q.Seq.d/                       1086   0.0
AFE530 (AFE530Q) /CSM/AF/AFE5-B/AFE530Q.Seq.d/                       1051   0.0
VFI845 (VFI845Q) /CSM/VF/VFI8-B/VFI845Q.Seq.d/                        995   0.0
AFO768 (AFO768Q) /CSM/AF/AFO7-C/AFO768Q.Seq.d/                        839   0.0
AFH849 (AFH849Q) /CSM/AF/AFH8-C/AFH849Q.Seq.d/                        819   0.0
AFN134 (AFN134Q) /CSM/AF/AFN1-B/AFN134Q.Seq.d/                        781   0.0
AFO866 (AFO866Q) /CSM/AF/AFO8-C/AFO866Q.Seq.d/                        777   0.0
AFN736 (AFN736Q) /CSM/AF/AFN7-B/AFN736Q.Seq.d/                        737   0.0
SLC424 (SLC424Q) /CSM/SL/SLC4-A/SLC424Q.Seq.d/                        636   0.0
SSD715 (SSD715Q) /CSM/SS/SSD7-A/SSD715Q.Seq.d/                        573   e-162
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ993764|BQ993764.1 QGF5G14.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA cloneQGF5G14, mRNA sequence.    66   7e-18  3
BQ872057|BQ872057.1 QGI13I20.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI13I20, mRNA sequence.    66   1e-15  3
BQ861621|BQ861621.1 QGC19C04.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC19C04, mRNA sequence.    66   1e-15  3
BQ874895|BQ874895.1 QGI6J07.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI6J07, mRNA sequence.    66   1e-15  3
BQ852273|BQ852273.1 QGB17J10.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB17J10, mRNA sequence.    66   1e-15  3
BQ864388|BQ864388.1 QGC26I18.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC26I18, mRNA sequence.    66   1e-15  3
BQ849920|BQ849920.1 QGB11C21.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB11C21, mRNA sequence.    66   1e-15  3
BQ860090|BQ860090.1 QGC14N03.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC14N03, mRNA sequence.    66   1e-15  3
BQ870179|BQ870179.1 QGD8F12.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGD8F12, mRNA sequence.    58   3e-13  3
BQ864296|BQ864296.1 QGC26F04.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC26F04, mRNA sequence.    66   2e-11  2
dna update 2004. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q68EY9) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   250   2e-65
(Q68EQ1) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   248   9e-65
FJ489652_1(FJ489652|pid:none) Carica papaya GDP-mannose pyrophos...   241   1e-62
(Q295Y7) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   241   1e-62
(Q6DBU5) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   240   3e-62
(A2VD83) RecName: Full=Mannose-1-phosphate guanyltransferase bet...   240   3e-62
FJ643600_1(FJ643600|pid:none) Actinidia latifolia GDP-D-mannose ...   237   2e-61
AY639647_1(AY639647|pid:none) Medicago sativa GMPase (GMP) mRNA,...   236   4e-61
AK243016_1(AK243016|pid:none) Oryza sativa Japonica Group cDNA, ...   236   6e-61
AK061976_1(AK061976|pid:none) Oryza sativa Japonica Group cDNA c...   235   1e-60
protein update 2009. 4.24
PSORT 

 psg: 0.46  gvh: 0.30  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for AFK424 is cyt
5' end seq. ID AFK424F
5' end seq. 
>AFK424F.Seq
ATTTAAATAGTTTTTTTAAGGATATTATAATTTCAAATTAAGTAATAATAAATAAAAATA
ATAATAAATAAAAATAATAATAAATAAAAATAAGAATAATAGTTTTATAAAAAAAAAA--
--------
Length of 5' end seq. 118
3' end seq. ID AFK424Z
3' end seq. 
>AFK424Z.Seq
----------GCTTTCCATAAATCTCATGGTGGTGAAGGTACAATCATGGTAACCAAAGT
TGAAGAACCTTCAAAATATGGTGTCGTTGTTTATAAAGAAGAAAATGGTCAAATCTTAAA
ATTCGTTGAAAAACCTCAAGTCTACGTTGGTAATAAAATTAATGCTGGTGTTTATATTTT
TAATCCAACAATTTTAGATAGAATTCAACCAAAACCAACATCAATTGAAAAAGAGATTTT
CCCAGCAATGGCAGCAGATAGTCAATTATATTGTATGCAATTGGAAGGATTTTGGATGGA
TGTTGGTCAACCAAAAGACTTTTTATCAGGTATGGGATTATATTTAAATTCATTAAAGTC
AAAACAACCAGAACTCTTAGCTACTGGCAATGGTATTATTGGACCAGTTTTAATTGATCC
ATCATCTGTCATTGAACCAGGTTGTTTAATTGGCCCAAACGTAACAATTGGTCCAAATTG
TGTTATTCAAGAAGGTACTCGTTTAGTTAATACAACAGTTTTAGAGGGTACTACAATTGG
TAAAAACTCTTGGATCAA
Length of 3' end seq. 548
Connected seq. ID AFK424P
Connected seq. 
>AFK424P.Seq
ATTTAAATAGTTTTTTTAAGGATATTATAATTTCAAATTAAGTAATAATAAATAAAAATA
ATAATAAATAAAAATAATAATAAATAAAAATAAGAATAATAGTTTTATAAAAAAAAAA--
--------GCTTTCCATAAATCTCATGGTGGTGAAGGTACAATCATGGTAACCAAAGTTG
AAGAACCTTCAAAATATGGTGTCGTTGTTTATAAAGAAGAAAATGGTCAAATCTTAAAAT
TCGTTGAAAAACCTCAAGTCTACGTTGGTAATAAAATTAATGCTGGTGTTTATATTTTTA
ATCCAACAATTTTAGATAGAATTCAACCAAAACCAACATCAATTGAAAAAGAGATTTTCC
CAGCAATGGCAGCAGATAGTCAATTATATTGTATGCAATTGGAAGGATTTTGGATGGATG
TTGGTCAACCAAAAGACTTTTTATCAGGTATGGGATTATATTTAAATTCATTAAAGTCAA
AACAACCAGAACTCTTAGCTACTGGCAATGGTATTATTGGACCAGTTTTAATTGATCCAT
CATCTGTCATTGAACCAGGTTGTTTAATTGGCCCAAACGTAACAATTGGTCCAAATTGTG
TTATTCAAGAAGGTACTCGTTTAGTTAATACAACAGTTTTAGAGGGTACTACAATTGGTA
AAAACTCTTGGATCAA
Length of connected seq. 666
Full length Seq ID -
Full length Seq. -
Length of full length seq. -