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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH678
Library SL
(Link to library)
Clone ID SLH678
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04159-1
Original site URL
Representative seq. ID SLH678E
(Link to Original site)
Representative DNA sequence 
>SLH678 (SLH678Q) /CSM/SL/SLH6-D/SLH678Q.Seq.d/
AAAAGCTCAATTAGAAACAGATTTAAAAAATATTTGCACTTTAGTACCATCAAATATTAC
AATGGAGTGTAAATTCTTTATGATATTAGCAGCTCCAATTATTGCTGGTGCTATTTCTAA
TGGTGAAAATCCACAAACACTTTGCTCTGACTATAAATTATGCACAACAACAACACAACA
AACACCAACAACCAACAATTATAGTAATCAACCAAACATCAATATTATGAAAAACAAAAT
TAAAGATATTTTTGTGGAATCAACTAACAATATTATTGAACCAAAAGAAAAAGTAACAAT
GAGAAGAAATTTTTAAACACTATTATTTAAAAAAAAATATAAATAAATAAGCATTTTTGT
AAAAAACAAAAAA
sequence update 1998. 7.14
Translated Amino Acid sequence 
KAQLETDLKNICTLVPSNITMECKFFMILAAPIIAGAISNGENPQTLCSDYKLCTTTTQQ
TPTTNNYSNQPNINIMKNKIKDIFVESTNNIIEPKEKVTMRRNF*tllfkkkyk*isifv
knkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kssirnrfkkylhfstikyyngv*ilydisssnycwcyf*w*kstntll*l*imhnnntt
ntnnqql**stkhqyyekqn*ryfcgin*qyy*tkrksnnekkflntii*kki*inkhfc
kkqk


Frame B:
KAQLETDLKNICTLVPSNITMECKFFMILAAPIIAGAISNGENPQTLCSDYKLCTTTTQQ
TPTTNNYSNQPNINIMKNKIKDIFVESTNNIIEPKEKVTMRRNF*tllfkkkyk*isifv
knkk


Frame C:
kln*kqi*kifal*yhqilqwsvnsl*y*qlqlllvlflmvkihkhfaltinyaqqqhnk
hqqptiivinqtsil*ktklkiflwnqltillnqkkk*q*eeifkhyylkknink*afl*
ktk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH678 (SLH678Q) /CSM/SL/SLH6-D/SLH678Q.Seq.d/                        321   4e-87
SLG865 (SLG865Q) /CSM/SL/SLG8-C/SLG865Q.Seq.d/                        321   4e-87
VHF479 (VHF479Q) /CSM/VH/VHF4-D/VHF479Q.Seq.d/                         36   0.36
SSJ270 (SSJ270Q) /CSM/SS/SSJ2-C/SSJ270Q.Seq.d/                         36   0.36
CHP594 (CHP594Q) /CSM/CH/CHP5-D/CHP594Q.Seq.d/                         36   0.36
VSB796 (VSB796Q) /CSM/VS/VSB7-D/VSB796Q.Seq.d/                         34   1.4
VHE665 (VHE665Q) /CSM/VH/VHE6-C/VHE665Q.Seq.d/                         34   1.4
VFI757 (VFI757Q) /CSM/VF/VFI7-C/VFI757Q.Seq.d/                         34   1.4
VFH685 (VFH685Q) /CSM/VF/VFH6-D/VFH685Q.Seq.d/                         34   1.4
SSG741 (SSG741Q) /CSM/SS/SSG7-B/SSG741Q.Seq.d/                         34   1.4
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039970) Dictyostelium discoideum slug cDNA, clone SLG865.      323   e-129  2
(AU039381) Dictyostelium discoideum slug cDNA, clone SLH678.      323   e-129  2
(AC217002) Solanum lycopersicum chromosome 11 clone C11HBa00...    44   0.046  2
(AC087744) Homo sapiens chromosome 18 clone RP11-673F9 map 1...    46   0.056  2
(AP001895) Homo sapiens genomic DNA, chromosome 18q12 clone:...    46   0.10   3
(EJ524390) 1092955172416 Global-Ocean-Sampling_GS-29-01-01-1...    38   0.35   2
(AC161952) Bos taurus clone CH240-109J2, WORKING DRAFT SEQUE...    40   0.79   2
(AC154904) Mus musculus BAC clone RP23-416C3 from chromosome...    46   0.93   1
(AC146608) Mus musculus BAC clone RP23-159D24 from chromosom...    46   0.93   1
(AC135377) Mus musculus BAC clone RP24-66B2 from chromosome ...    46   0.93   1
dna update 2009. 6.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001402_2576(CP001402|pid:none) Sulfolobus islandicus M.16.4, c...    36   0.37
CP001403_2732(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14...    35   0.81
CP001401_2497(CP001401|pid:none) Sulfolobus islandicus M.16.27, ...    35   0.81
CR388420_1(CR388420|pid:none) Zebrafish DNA sequence from clone ...    35   1.1
AF162129_1(AF162129|pid:none) Drosophila melanogaster ecdysone d...    35   1.1
BC056717_1(BC056717|pid:none) Danio rerio prosaposin, mRNA (cDNA...    35   1.1
AF276996_1(AF276996|pid:none) Danio rerio lysosomal cofactor/neu...    35   1.1
DQ062781_1(DQ062781|pid:none) Drosophila simulans saposin-relate...    35   1.1
DQ363441_1(DQ363441|pid:none) Ictalurus punctatus clone C111BF07...    33   3.1
CP001357_639(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ...    33   4.0
protein update 2009. 7. 5
PSORT 

 psg: 0.84  gvh: 0.60  alm: 0.31  top: 0.47  tms: 0.07  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SLH678 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLH678E
Full length Seq. 
>SLH678E.Seq
AAAAGCTCAATTAGAAACAGATTTAAAAAATATTTGCACTTTAGTACCATCAAATATTAC
AATGGAGTGTAAATTCTTTATGATATTAGCAGCTCCAATTATTGCTGGTGCTATTTCTAA
TGGTGAAAATCCACAAACACTTTGCTCTGACTATAAATTATGCACAACAACAACACAACA
AACACCAACAACCAACAATTATAGTAATCAACCAAACATCAATATTATGAAAAACAAAAT
TAAAGATATTTTTGTGGAATCAACTAACAATATTATTGAACCAAAAGAAAAAGTAACAAT
GAGAAGAAATTTTTAAACACTATTATTTAAAAAAAAATATAAATAAATAAGCATTTTTGT
AAAAAACAAAAAA
Length of full length seq. 373