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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH711
Library SL
(Link to library)
Clone ID SLH711
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16496-1
Original site URL
Representative seq. ID SLH711P
(Link to Original site)
Representative DNA sequence 
>SLH711 (SLH711Q) /CSM/SL/SLH7-A/SLH711Q.Seq.d/
AATAGATTAAAGTTTTCCATCTATTTATTTATTTTCCTCAATTTACAATTTTTCAAATTA
ATTAATACAATATTAAAGTTAAAAGANAAAAAAAAAAAAAGAAATTTTTTTTTTTTTATT
TTTTTTATTATCATCTTGTGTGCTTGGTCAAACAAAATAATAACTCACCAATAATAACCT
TAAGAAATCATAATAATAACTAAATCAATAAAGTAATAATAATAACAATTTTAAAAAAAA
AATGGCTACACCATACATAGGTGCTAAAATAGTATTAATCTCAAAAAGTCTTGTCAAATA
TGAAGGTATTCTCTATACAATTGACCCAAAAGATAATACCTTGTCTTTAAAAAATGTCAA
ATCTTTCGGAACTGAAGGAAGAAGACAAGGTACACAAATTCCACCATCAACAGAAATTTT
TGATTACATTGTATTCAAGAGTTCAGATATTAATGATCTCAATATATGTGATTATCCAAC
CACCCCAACAGATGACTCAAAATTAACAACACCAAAGCCAACCATCTCAACTAGTACATC
ACCATCATCAAXXXXXXXXXXATTATCAAACTCTAAATTTAGCAAGGATAAATTGGCTGA
AGAATTCACCACTACCACAACCACCACAGAAATCACAAGCAACAGTATCTCAAGTAGCAT
TAGTAGTACCTCTGGTTTGAATGAGGATGAAATTGACGAGTCTGCAATCGAAGCCATCAC
CGCCGGTATCTCTCATTTACCAACCTACTCACCAACTAGTTTCTTTGATAGCATTTCATG
TGAAGCTTTAGATAAGGCAAACGAAGGTCAAGGTAAATCAAAATCACTCTATGAACAAAG
AAAAATCGATCAAGAAACCTTTGGTGTTTTATCTGTTAGATATGGTAGAGGTGGTAGAGG
TGGAAGAGGTGGTAGACATAATAATAGTCACAGATACTATAATAATAATAATAACAACAA
CAATAGTAACACTACCCAAAACAAAACAAACGCTTTCCAACAACAAAAAACTCAATAATT
AATCAAATAATATTAAAAAAAAAAAAGAAAAAAAAAAAACAAAAAAAATTAAATTTTGAG
CGATCAAATATNTCAATCAAAAACAAATTGCCTTCAAAAGTTTTTTTTTTTTTAAATAAA
AAAAGATATAAAAAAAAATTC
sequence update 1999. 2. 9
Translated Amino Acid sequence 
id*sfpsiylfssiynfsn*liqy*s*kxkkkkeiffflffllsscvlgqtk**ltnnnl
kks***lnq*SNNNNNFKKKMATPYIGAKIVLISKSLVKYEGILYTIDPKDNTLSLKNVK
SFGTEGRRQGTQIPPSTEIFDYIVFKSSDINDLNICDYPTTPTDDSKLTTPKPTISTSTS
PSS---

---LSNSKFSKDKLAEEFTTTTTTTEITSNSISSSISSTSGLNEDEIDESAIEAITAGIS
HLPTYSPTSFFDSISCEALDKANEGQGKSKSLYEQRKIDQETFGVLSVRYGRGGRGGRGG
RHNNSHRYYNNNNNNNNSNTTQNKTNAFQQQKTQ*lik*y*kkkrkkknkkn*ilsdqix
qsktnclqkffff*ikkdikkn
Translated Amino Acid sequence (All Frames) 
Frame A:
nrlkfsiylfiflnlqffklintilklkxkkkkrnffffiffiiilcawsnkiithq**p
*eiiiitksik****qf*kkngytihrc*nsinlkkscqi*ryslyn*pkr*ylvfkkcq
ifrn*rkktrytnstinrnf*lhciqefry**sqym*lsnhpnr*lkinntkanhln*yi
tii---

---iikl*i*qg*ig*rihhyhnhhrnhkqqylk*h**ylwfe*g*n*rvcnrshhrryl
sftnlltn*fl**hfm*sfr*gkrrsr*ikitl*tkknrsrnlwcfic*iw*rw*rwkrw
*t***sqil*****qqq**hypkqnkrfpttknsiinqiilkkkkkkkkqkklnfersnx
siknklpskvffflnkkrykkkf

Frame B:
id*sfpsiylfssiynfsn*liqy*s*kxkkkkeiffflffllsscvlgqtk**ltnnnl
kks***lnq*SNNNNNFKKKMATPYIGAKIVLISKSLVKYEGILYTIDPKDNTLSLKNVK
SFGTEGRRQGTQIPPSTEIFDYIVFKSSDINDLNICDYPTTPTDDSKLTTPKPTISTSTS
PSS---

---LSNSKFSKDKLAEEFTTTTTTTEITSNSISSSISSTSGLNEDEIDESAIEAITAGIS
HLPTYSPTSFFDSISCEALDKANEGQGKSKSLYEQRKIDQETFGVLSVRYGRGGRGGRGG
RHNNSHRYYNNNNNNNNSNTTQNKTNAFQQQKTQ*lik*y*kkkrkkknkkn*ilsdqix
qsktnclqkffff*ikkdikkn

Frame C:
*ikvfhlfiyfpqftifqin*ynikvkrxkkkkkffffyffyyhlvclvkqnnnspiitl
rnhnnn*inkviiitilkkkwlhht*vlk*y*sqkvlsnmkvfsiqltqkiipcl*kmsn
lselkeedkvhkfhhqqkflitlysrvqilmisiyviiqppqqmtqn*qhqsqpsqlvhh
hhq---

---yqtlnlarinwlknsplpqppqksqatvsqvalvvplv*mrmkltslqskpsppvsl
iyqpthqlvsliafhvkl*irqtkvkvnqnhsmnkeksikkplvfylldmvevveveevv
diiivtdtiiiiitttivtlpktkqtlsnnkklnn*snnikkkkekkktkkikf*aikyx
nqkqiafksffffk*kki*kki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH711 (SLH711Q) /CSM/SL/SLH7-A/SLH711Q.Seq.d/                       1271   0.0
SLG614 (SLG614Q) /CSM/SL/SLG6-A/SLG614Q.Seq.d/                        698   0.0
SHG474 (SHG474Q) /CSM/SH/SHG4-D/SHG474Q.Seq.d/                        698   0.0
VFC401 (VFC401Q) /CSM/VF/VFC4-A/VFC401Q.Seq.d/                        656   0.0
CHL567 (CHL567Q) /CSM/CH/CHL5-C/CHL567Q.Seq.d/                        656   0.0
CHP633 (CHP633Q) /CSM/CH/CHP6-B/CHP633Q.Seq.d/                        613   e-174
AFA385 (AFA385Q) /CSM/AF/AFA3-D/AFA385Q.Seq.d/                        613   e-174
VHE405 (VHE405Q) /CSM/VH/VHE4-A/VHE405Q.Seq.d/                        545   e-154
VHM121 (VHM121Q) /CSM/VH/VHM1-A/VHM121Q.Seq.d/                        535   e-151
VSJ357 (VSJ357Q) /CSM/VS/VSJ3-C/VSJ357Q.Seq.d/                        454   e-126
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039398) Dictyostelium discoideum slug cDNA, clone SLH711.      702   0.0    2
(AU039863) Dictyostelium discoideum slug cDNA, clone SLG614.      702   0.0    1
(BJ406888) Dictyostelium discoideum cDNA clone:dds36d20, 3' ...   702   0.0    1
(BJ382681) Dictyostelium discoideum cDNA clone:ddc45e17, 3' ...   656   0.0    1
(BJ429821) Dictyostelium discoideum cDNA clone:ddv5b02, 3' e...   394   0.0    3
(AU062130) Dictyostelium discoideum slug cDNA, clone SLH711.      613   e-175  2
(BJ370190) Dictyostelium discoideum cDNA clone:ddc53a10, 5' ...   613   e-173  2
(BJ325663) Dictyostelium discoideum cDNA clone:dda1j21, 5' e...   613   e-171  1
(BJ444066) Dictyostelium discoideum cDNA clone:ddv55i05, 3' ...   539   e-149  1
(BJ420384) Dictyostelium discoideum cDNA clone:ddv39j02, 5' ...   507   e-148  2
dna update 2009. 6.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC080031_1(BC080031|pid:none) Xenopus laevis MGC82934 protein, m...    99   4e-19
AB257699_1(AB257699|pid:none) Xenopus laevis mRNA for RAP55 prot...    99   4e-19
BC067936_1(BC067936|pid:none) Xenopus tropicalis LSM14A, SCD6 ho...    98   5e-19
AK027643_1(AK027643|pid:none) Homo sapiens cDNA FLJ14737 fis, cl...    98   5e-19
(Q5R4R4) RecName: Full=Protein LSM14 homolog A; AltName: Full=Pr...    98   5e-19
BC042251_1(BC042251|pid:none) Xenopus laevis hypothetical protei...    98   5e-19
(Q8K2F8) RecName: Full=Protein LSM14 homolog A; AltName: Full=Pr...    98   5e-19
BC047185_1(BC047185|pid:none) Danio rerio zgc:77202, mRNA (cDNA ...    98   5e-19
(Q3MHF8) RecName: Full=Protein LSM14 homolog A; AltName: Full=Pr...    98   5e-19
BC166537_1(BC166537|pid:none) Rattus norvegicus LSM14A, SCD6 hom...    98   5e-19
protein update 2009. 6. 4
PSORT 

 psg: 0.87  gvh: 0.40  alm: 0.42  top: 0.73  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SLH711 is cyt
5' end seq. ID SLH711F
5' end seq. 
>SLH711F.Seq
AATAGATTAAAGTTTTCCATCTATTTATTTATTTTCCTCAATTTACAATTTTTCAAATTA
ATTAATACAATATTAAAGTTAAAAGANAAAAAAAAAAAAAGAAATTTTTTTTTTTTTATT
TTTTTTATTATCATCTTGTGTGCTTGGTCAAACAAAATAATAACTCACCAATAATAACCT
TAAGAAATCATAATAATAACTAAATCAATAAAGTAATAATAATAACAATTTTAAAAAAAA
AATGGCTACACCATACATAGGTGCTAAAATAGTATTAATCTCAAAAAGTCTTGTCAAATA
TGAAGGTATTCTCTATACAATTGACCCAAAAGATAATACCTTGTCTTTAAAAAATGTCAA
ATCTTTCGGAACTGAAGGAAGAAGACAAGGTACACAAATTCCACCATCAACAGAAATTTT
TGATTACATTGTATTCAAGAGTTCAGATATTAATGATCTCAATATATGTGATTATCCAAC
CACCCCAACAGATGACTCAAAATTAACAACACCAAAGCCAACCATCTCAACTAGTACATC
ACCATCATCAA----------
Length of 5' end seq. 551
3' end seq. ID SLH711Z
3' end seq. 
>SLH711Z.Seq
----------ATTATCAAACTCTAAATTTAGCAAGGATAAATTGGCTGAAGAATTCACCA
CTACCACAACCACCACAGAAATCACAAGCAACAGTATCTCAAGTAGCATTAGTAGTACCT
CTGGTTTGAATGAGGATGAAATTGACGAGTCTGCAATCGAAGCCATCACCGCCGGTATCT
CTCATTTACCAACCTACTCACCAACTAGTTTCTTTGATAGCATTTCATGTGAAGCTTTAG
ATAAGGCAAACGAAGGTCAAGGTAAATCAAAATCACTCTATGAACAAAGAAAAATCGATC
AAGAAACCTTTGGTGTTTTATCTGTTAGATATGGTAGAGGTGGTAGAGGTGGAAGAGGTG
GTAGACATAATAATAGTCACAGATACTATAATAATAATAATAACAACAACAATAGTAACA
CTACCCAAAACAAAACAAACGCTTTCCAACAACAAAAAACTCAATAATTAATCAAATAAT
ATTAAAAAAAAAAAAGAAAAAAAAAAAACAAAAAAAATTAAATTTTGAGCGATCAAATAT
NTCAATCAAAAACAAATTGCCTTCAAAAGTTTTTTTTTTTTTAAATAAAAAAAGATATAA
AAAAAAATTC
Length of 3' end seq. 600
Connected seq. ID SLH711P
Connected seq. 
>SLH711P.Seq
AATAGATTAAAGTTTTCCATCTATTTATTTATTTTCCTCAATTTACAATTTTTCAAATTA
ATTAATACAATATTAAAGTTAAAAGANAAAAAAAAAAAAAGAAATTTTTTTTTTTTTATT
TTTTTTATTATCATCTTGTGTGCTTGGTCAAACAAAATAATAACTCACCAATAATAACCT
TAAGAAATCATAATAATAACTAAATCAATAAAGTAATAATAATAACAATTTTAAAAAAAA
AATGGCTACACCATACATAGGTGCTAAAATAGTATTAATCTCAAAAAGTCTTGTCAAATA
TGAAGGTATTCTCTATACAATTGACCCAAAAGATAATACCTTGTCTTTAAAAAATGTCAA
ATCTTTCGGAACTGAAGGAAGAAGACAAGGTACACAAATTCCACCATCAACAGAAATTTT
TGATTACATTGTATTCAAGAGTTCAGATATTAATGATCTCAATATATGTGATTATCCAAC
CACCCCAACAGATGACTCAAAATTAACAACACCAAAGCCAACCATCTCAACTAGTACATC
ACCATCATCAA----------ATTATCAAACTCTAAATTTAGCAAGGATAAATTGGCTGA
AGAATTCACCACTACCACAACCACCACAGAAATCACAAGCAACAGTATCTCAAGTAGCAT
TAGTAGTACCTCTGGTTTGAATGAGGATGAAATTGACGAGTCTGCAATCGAAGCCATCAC
CGCCGGTATCTCTCATTTACCAACCTACTCACCAACTAGTTTCTTTGATAGCATTTCATG
TGAAGCTTTAGATAAGGCAAACGAAGGTCAAGGTAAATCAAAATCACTCTATGAACAAAG
AAAAATCGATCAAGAAACCTTTGGTGTTTTATCTGTTAGATATGGTAGAGGTGGTAGAGG
TGGAAGAGGTGGTAGACATAATAATAGTCACAGATACTATAATAATAATAATAACAACAA
CAATAGTAACACTACCCAAAACAAAACAAACGCTTTCCAACAACAAAAAACTCAATAATT
AATCAAATAATATTAAAAAAAAAAAAGAAAAAAAAAAAACAAAAAAAATTAAATTTTGAG
CGATCAAATATNTCAATCAAAAACAAATTGCCTTCAAAAGTTTTTTTTTTTTTAAATAAA
AAAAGATATAAAAAAAAATTC
Length of connected seq. 1151
Full length Seq ID -
Full length Seq. -
Length of full length seq. -