NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH781
Library SL
(Link to library)
Clone ID SLH781
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLH781Z
(Link to Original site)
Representative DNA sequence 
>SLH781 (SLH781Q) /CSM/SL/SLH7-D/SLH781Q.Seq.d/
XXXXXXXXXXTGCCATTCAAGCCGTCTTATCCTTATATGCCTCTGGTCGTACCACTGGTA
TTGTTATGGATTCAGGTGATGGTGTCTCCCACACTGTACCAATCTATGAAGGTTATGCCT
TACCACATGCCATCTTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGA
AAATCTTAACTGAACGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCAGAG
ATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTG
CCTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATCG
GTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAAT
CAGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTA
AAGATTTATACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGCTG
ATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTG
CTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAA
CTTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCC
ACAGAAAATGTTTCTAAACAATTAATAAATATGTTGTATTTTATTTAAACTTAAATTATA
AAAAAAAAAAAA
sequence update 1998. 7.14
Translated Amino Acid sequence 
---AIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMK
ILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIG
NERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIAD
RMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVH
RKCF*tinkyvvfylnlnykkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---AIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMK
ILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIG
NERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIAD
RMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVH
RKCF*tinkyvvfylnlnykkkk


Frame B:
---pfkpsypymplvvplvllwiqvmvsptlyqsmkvmpyhmpsyv*i*lvvillit**k
s*lnvvthsppllkeksseiskkn*ptspstlklkckllphhqpsknhtnyqtvksspsv
mnvsvaqkpssnhhs*vwnqlvstkppttps*nvmlisvkiytvmssylvvqlcsqvlli
v*tkn*ll*phqp*klksllhqnvntlsglvdls*lhsqlsnkcgspkknmtnqvhqlst
envskqlinmlyfi*t*iikkkk


Frame C:
---hssrliliclwsyhwycygfr*wclphctnl*rlclttchltfrfsws*sy*lhden
ln*twllihhhc*krnrqryqrkislrrprl*s*nanccliisprkiiritrrsshhhr*
*tfplprsplptiilrygiswyprnhlqlhhem*c*yp*rfir*crliwwynyvpryc*s
yeqrincfspinhen*nhcstrt*ilcldwwiylsftlnfptnvdlqrri*rirsincpq
kmflnn**iccilfklkl*kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH781 (SLH781Q) /CSM/SL/SLH7-D/SLH781Q.Seq.d/                       1524   0.0
SLB156 (SLB156Q) /CSM/SL/SLB1-C/SLB156Q.Seq.d/                       1516   0.0
VFI535 (VFI535Q) /CSM/VF/VFI5-B/VFI535Q.Seq.d/                       1507   0.0
VFG241 (VFG241Q) /CSM/VF/VFG2-B/VFG241Q.Seq.d/                       1507   0.0
VFE485 (VFE485Q) /CSM/VF/VFE4-D/VFE485Q.Seq.d/                       1507   0.0
SLH895 (SLH895Q) /CSM/SL/SLH8-D/SLH895Q.Seq.d/                       1503   0.0
VHQ271 (VHQ271Q) /CSM/VH/VHQ2-C/VHQ271Q.Seq.d/                       1501   0.0
FC-AB02 (FC-AB02Q) /CSM/FC/FC-AB/FC-AB02Q.Seq.d/                     1501   0.0
SLH788 (SLH788Q) /CSM/SL/SLH7-D/SLH788Q.Seq.d/                       1489   0.0
SFD514 (SFD514Q) /CSM/SF/SFD5-A/SFD514Q.Seq.d/                       1477   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039434) Dictyostelium discoideum slug cDNA, clone SLH781.     1524   0.0    1
(AU033549) Dictyostelium discoideum slug cDNA, clone SLB156.     1516   0.0    1
(AU039497) Dictyostelium discoideum slug cDNA, clone SLH895.     1503   0.0    1
(AU039439) Dictyostelium discoideum slug cDNA, clone SLH788.     1489   0.0    1
(AU035022) Dictyostelium discoideum slug cDNA, clone SLE508.     1471   0.0    1
(BJ428517) Dictyostelium discoideum cDNA clone:ddv12c11, 3' ...  1471   0.0    1
(BJ432302) Dictyostelium discoideum cDNA clone:ddv18e09, 3' ...  1467   0.0    1
(BJ431101) Dictyostelium discoideum cDNA clone:ddv9j22, 3' e...  1465   0.0    1
(AU033622) Dictyostelium discoideum slug cDNA, clone SLB239.     1461   0.0    1
(BJ431206) Dictyostelium discoideum cDNA clone:ddv13a12, 3' ...  1461   0.0    1
dna update 2009. 6.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   479   e-134
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   478   e-133
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        478   e-133
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   475   e-133
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   475   e-133
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   474   e-132
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          471   e-131
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   471   e-131
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p...   468   e-131
AY615872_1(AY615872|pid:none) Phalansterium solitarium clone B a...   467   e-130
protein update 2009. 6. 4
PSORT 

 psg: 0.88  gvh: 0.61  alm: 0.46  top: 0.43  tms: 0.00  mit: 0.30  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 24.0 %: nuclear
	 20.0 %: mitochondrial
	 16.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SLH781 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH781Z
3' end seq. 
>SLH781Z.Seq
----------TGCCATTCAAGCCGTCTTATCCTTATATGCCTCTGGTCGTACCACTGGTA
TTGTTATGGATTCAGGTGATGGTGTCTCCCACACTGTACCAATCTATGAAGGTTATGCCT
TACCACATGCCATCTTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGA
AAATCTTAACTGAACGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCAGAG
ATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTG
CCTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATCG
GTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAAT
CAGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTA
AAGATTTATACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGCTG
ATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTG
CTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAA
CTTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCC
ACAGAAAATGTTTCTAAACAATTAATAAATATGTTGTATTTTATTTAAACTTAAATTATA
AAAAAAAAAAAA
Length of 3' end seq. 782
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -